Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000909 and ABIE53_000910 are separated by 85 nucleotides ABIE53_000910 and ABIE53_000911 are separated by 92 nucleotides
ABIE53_000909: ABIE53_000909 - putative transport protein, at 984,674 to 986,356
_000909
ABIE53_000910: ABIE53_000910 - putative transport protein, at 986,442 to 988,124
_000910
ABIE53_000911: ABIE53_000911 - aspartate 4-decarboxylase, at 988,217 to 989,881
_000911
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 985.477 kb on - strand, within ABIE53_000909 at 985.658 kb on + strand, within ABIE53_000909 at 985.658 kb on + strand, within ABIE53_000909 at 985.658 kb on + strand, within ABIE53_000909 at 985.658 kb on + strand, within ABIE53_000909 at 985.659 kb on - strand, within ABIE53_000909 at 985.659 kb on - strand, within ABIE53_000909 at 985.787 kb on + strand, within ABIE53_000909 at 985.788 kb on - strand, within ABIE53_000909 at 985.788 kb on - strand, within ABIE53_000909 at 985.788 kb on - strand, within ABIE53_000909 at 985.788 kb on - strand, within ABIE53_000909 at 985.788 kb on - strand, within ABIE53_000909 at 985.823 kb on + strand, within ABIE53_000909 at 985.935 kb on + strand, within ABIE53_000909 at 985.936 kb on - strand, within ABIE53_000909 at 985.936 kb on - strand, within ABIE53_000909 at 985.936 kb on - strand, within ABIE53_000909 at 985.936 kb on - strand, within ABIE53_000909 at 985.936 kb on - strand, within ABIE53_000909 at 986.027 kb on - strand, within ABIE53_000909 at 986.081 kb on + strand, within ABIE53_000909 at 986.082 kb on - strand, within ABIE53_000909 at 986.143 kb on - strand, within ABIE53_000909 at 986.285 kb on + strand at 986.285 kb on + strand at 986.285 kb on + strand at 986.285 kb on + strand at 986.285 kb on + strand at 986.285 kb on + strand at 986.286 kb on - strand at 986.286 kb on - strand at 986.354 kb on + strand at 986.413 kb on - strand at 986.413 kb on - strand at 986.413 kb on - strand at 986.425 kb on + strand at 986.453 kb on - strand at 986.483 kb on - strand at 986.511 kb on + strand at 986.511 kb on + strand at 986.645 kb on + strand, within ABIE53_000910 at 986.645 kb on + strand, within ABIE53_000910 at 986.650 kb on - strand, within ABIE53_000910 at 986.926 kb on - strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.937 kb on + strand, within ABIE53_000910 at 986.938 kb on - strand, within ABIE53_000910 at 986.938 kb on - strand, within ABIE53_000910 at 986.938 kb on - strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.203 kb on + strand, within ABIE53_000910 at 987.204 kb on - strand, within ABIE53_000910 at 987.204 kb on - strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.437 kb on + strand, within ABIE53_000910 at 987.437 kb on + strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.519 kb on + strand, within ABIE53_000910 at 987.519 kb on + strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.565 kb on - strand, within ABIE53_000910 at 987.577 kb on - strand, within ABIE53_000910 at 987.577 kb on - strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.611 kb on - strand, within ABIE53_000910 at 987.744 kb on + strand, within ABIE53_000910 at 987.744 kb on + strand, within ABIE53_000910 at 987.745 kb on - strand, within ABIE53_000910 at 987.745 kb on - strand, within ABIE53_000910 at 987.887 kb on - strand, within ABIE53_000910 at 987.887 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.945 kb on + strand, within ABIE53_000910 at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.135 kb on + strand at 988.136 kb on - strand at 988.253 kb on - strand at 988.463 kb on + strand, within ABIE53_000911 at 988.463 kb on + strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.583 kb on + strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.626 kb on - strand, within ABIE53_000911 at 988.681 kb on + strand, within ABIE53_000911 at 988.681 kb on + strand, within ABIE53_000911 at 988.682 kb on - strand, within ABIE53_000911 at 988.682 kb on - strand, within ABIE53_000911 at 988.710 kb on - strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.843 kb on + strand, within ABIE53_000911 at 988.843 kb on + strand, within ABIE53_000911 at 988.877 kb on + strand, within ABIE53_000911 at 988.877 kb on + strand, within ABIE53_000911 at 988.878 kb on - strand, within ABIE53_000911 at 988.878 kb on - strand, within ABIE53_000911 at 988.904 kb on + strand, within ABIE53_000911 at 988.905 kb on - strand, within ABIE53_000911 at 988.905 kb on - strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Sucrose 5 mM remove 985,477 - ABIE53_000909 0.48 +2.1 985,658 + ABIE53_000909 0.58 +0.3 985,658 + ABIE53_000909 0.58 -1.2 985,658 + ABIE53_000909 0.58 -0.7 985,658 + ABIE53_000909 0.58 +4.1 985,659 - ABIE53_000909 0.59 -0.7 985,659 - ABIE53_000909 0.59 -0.7 985,787 + ABIE53_000909 0.66 -1.3 985,788 - ABIE53_000909 0.66 +0.5 985,788 - ABIE53_000909 0.66 -3.1 985,788 - ABIE53_000909 0.66 +1.5 985,788 - ABIE53_000909 0.66 +0.2 985,788 - ABIE53_000909 0.66 +0.6 985,823 + ABIE53_000909 0.68 -0.6 985,935 + ABIE53_000909 0.75 -1.7 985,936 - ABIE53_000909 0.75 +0.5 985,936 - ABIE53_000909 0.75 -2.0 985,936 - ABIE53_000909 0.75 +0.5 985,936 - ABIE53_000909 0.75 -0.0 985,936 - ABIE53_000909 0.75 -1.3 986,027 - ABIE53_000909 0.80 -0.7 986,081 + ABIE53_000909 0.84 -1.2 986,082 - ABIE53_000909 0.84 -1.6 986,143 - ABIE53_000909 0.87 +0.7 986,285 + +1.1 986,285 + -0.7 986,285 + +1.1 986,285 + -0.9 986,285 + +1.1 986,285 + -1.2 986,286 - -0.9 986,286 - +2.1 986,354 + -0.7 986,413 - +0.1 986,413 - -1.2 986,413 - +2.2 986,425 + -0.0 986,453 - +0.1 986,483 - +1.1 986,511 + -0.7 986,511 + +1.3 986,645 + ABIE53_000910 0.12 -0.7 986,645 + ABIE53_000910 0.12 -1.2 986,650 - ABIE53_000910 0.12 -2.3 986,926 - ABIE53_000910 0.29 -0.1 986,937 + ABIE53_000910 0.29 -0.1 986,937 + ABIE53_000910 0.29 +0.9 986,937 + ABIE53_000910 0.29 -0.6 986,937 + ABIE53_000910 0.29 +0.8 986,937 + ABIE53_000910 0.29 -1.9 986,937 + ABIE53_000910 0.29 -3.7 986,937 + ABIE53_000910 0.29 -0.1 986,938 - ABIE53_000910 0.29 -0.5 986,938 - ABIE53_000910 0.29 +0.8 986,938 - ABIE53_000910 0.29 +0.5 987,203 + ABIE53_000910 0.45 -1.2 987,203 + ABIE53_000910 0.45 -0.3 987,203 + ABIE53_000910 0.45 +0.4 987,203 + ABIE53_000910 0.45 -0.2 987,203 + ABIE53_000910 0.45 -0.5 987,203 + ABIE53_000910 0.45 -0.2 987,203 + ABIE53_000910 0.45 -0.2 987,204 - ABIE53_000910 0.45 +1.5 987,204 - ABIE53_000910 0.45 +1.6 987,435 + ABIE53_000910 0.59 +0.0 987,435 + ABIE53_000910 0.59 -1.2 987,435 + ABIE53_000910 0.59 -0.9 987,435 + ABIE53_000910 0.59 -0.5 987,436 - ABIE53_000910 0.59 -1.6 987,436 - ABIE53_000910 0.59 +1.3 987,436 - ABIE53_000910 0.59 -1.5 987,436 - ABIE53_000910 0.59 +1.8 987,437 + ABIE53_000910 0.59 -0.4 987,437 + ABIE53_000910 0.59 +0.8 987,438 - ABIE53_000910 0.59 +1.1 987,438 - ABIE53_000910 0.59 -0.5 987,438 - ABIE53_000910 0.59 -2.3 987,519 + ABIE53_000910 0.64 +1.9 987,519 + ABIE53_000910 0.64 +0.9 987,520 - ABIE53_000910 0.64 -3.1 987,520 - ABIE53_000910 0.64 +0.6 987,520 - ABIE53_000910 0.64 -0.9 987,520 - ABIE53_000910 0.64 +2.1 987,565 - ABIE53_000910 0.67 +1.0 987,577 - ABIE53_000910 0.67 -2.3 987,577 - ABIE53_000910 0.67 -0.3 987,600 + ABIE53_000910 0.69 +1.1 987,600 + ABIE53_000910 0.69 -0.9 987,600 + ABIE53_000910 0.69 +0.3 987,600 + ABIE53_000910 0.69 -0.7 987,600 + ABIE53_000910 0.69 -0.5 987,601 - ABIE53_000910 0.69 -2.1 987,601 - ABIE53_000910 0.69 +2.1 987,601 - ABIE53_000910 0.69 -0.2 987,601 - ABIE53_000910 0.69 +1.4 987,601 - ABIE53_000910 0.69 -0.9 987,601 - ABIE53_000910 0.69 -2.3 987,601 - ABIE53_000910 0.69 -0.2 987,610 + ABIE53_000910 0.69 -2.5 987,610 + ABIE53_000910 0.69 +3.2 987,610 + ABIE53_000910 0.69 -0.3 987,611 - ABIE53_000910 0.69 -0.5 987,744 + ABIE53_000910 0.77 -0.2 987,744 + ABIE53_000910 0.77 -0.9 987,745 - ABIE53_000910 0.77 -2.7 987,745 - ABIE53_000910 0.77 -0.9 987,887 - ABIE53_000910 0.86 +0.8 987,887 - ABIE53_000910 0.86 +2.9 987,934 - ABIE53_000910 0.89 +2.5 987,934 - ABIE53_000910 0.89 -0.2 987,934 - ABIE53_000910 0.89 -1.0 987,934 - ABIE53_000910 0.89 +1.6 987,945 + ABIE53_000910 0.89 -2.1 988,065 + +1.3 988,065 + +1.6 988,065 + -1.9 988,065 + -0.9 988,065 + -1.3 988,065 + -3.6 988,066 - -0.7 988,066 - -0.5 988,066 - -1.8 988,066 - +1.3 988,066 - -2.6 988,135 + -1.1 988,136 - +1.0 988,253 - +0.5 988,463 + ABIE53_000911 0.15 -2.4 988,463 + ABIE53_000911 0.15 +1.3 988,464 - ABIE53_000911 0.15 +0.5 988,464 - ABIE53_000911 0.15 -0.2 988,464 - ABIE53_000911 0.15 +0.1 988,464 - ABIE53_000911 0.15 -0.7 988,464 - ABIE53_000911 0.15 -0.2 988,464 - ABIE53_000911 0.15 +0.3 988,464 - ABIE53_000911 0.15 -1.3 988,583 + ABIE53_000911 0.22 -1.3 988,584 - ABIE53_000911 0.22 +1.1 988,584 - ABIE53_000911 0.22 -1.1 988,584 - ABIE53_000911 0.22 -1.3 988,584 - ABIE53_000911 0.22 -1.6 988,584 - ABIE53_000911 0.22 +1.6 988,584 - ABIE53_000911 0.22 +3.1 988,584 - ABIE53_000911 0.22 +0.1 988,626 - ABIE53_000911 0.25 +2.0 988,681 + ABIE53_000911 0.28 -0.4 988,681 + ABIE53_000911 0.28 +0.5 988,682 - ABIE53_000911 0.28 -1.7 988,682 - ABIE53_000911 0.28 -1.9 988,710 - ABIE53_000911 0.30 -1.8 988,796 + ABIE53_000911 0.35 -1.1 988,796 + ABIE53_000911 0.35 -2.5 988,796 + ABIE53_000911 0.35 -0.9 988,796 + ABIE53_000911 0.35 -2.0 988,797 - ABIE53_000911 0.35 -1.5 988,797 - ABIE53_000911 0.35 -3.1 988,797 - ABIE53_000911 0.35 -0.9 988,797 - ABIE53_000911 0.35 +1.1 988,797 - ABIE53_000911 0.35 -2.9 988,797 - ABIE53_000911 0.35 -0.9 988,843 + ABIE53_000911 0.38 +0.5 988,843 + ABIE53_000911 0.38 -0.2 988,877 + ABIE53_000911 0.40 +0.1 988,877 + ABIE53_000911 0.40 +0.9 988,878 - ABIE53_000911 0.40 -2.2 988,878 - ABIE53_000911 0.40 +4.1 988,904 + ABIE53_000911 0.41 -1.9 988,905 - ABIE53_000911 0.41 +1.2 988,905 - ABIE53_000911 0.41 -2.5 989,063 + ABIE53_000911 0.51 +0.5 989,063 + ABIE53_000911 0.51 +0.3 989,063 + ABIE53_000911 0.51 -0.6 989,063 + ABIE53_000911 0.51 +0.3 989,063 + ABIE53_000911 0.51 -3.7 989,064 - ABIE53_000911 0.51 +0.0 989,064 - ABIE53_000911 0.51 +1.7 989,064 - ABIE53_000911 0.51 -1.5 989,120 + ABIE53_000911 0.54 -2.3 989,120 + ABIE53_000911 0.54 +0.9 989,120 + ABIE53_000911 0.54 -2.3
Or see this region's nucleotide sequence