Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000574

Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000573 and ABIE53_000574 are separated by 36 nucleotidesABIE53_000574 and ABIE53_000575 are separated by 318 nucleotides ABIE53_000573: ABIE53_000573 - hydroxymethylglutaryl-CoA lyase, at 623,390 to 624,316 _000573 ABIE53_000574: ABIE53_000574 - glyoxylate/hydroxypyruvate reductase A, at 624,353 to 625,294 _000574 ABIE53_000575: ABIE53_000575 - putative alpha/beta hydrolase family esterase, at 625,613 to 626,215 _000575 Position (kb) 624 625 626Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 623.353 kb on - strandat 623.393 kb on + strandat 623.393 kb on + strandat 623.547 kb on + strand, within ABIE53_000573at 623.547 kb on + strand, within ABIE53_000573at 623.547 kb on + strand, within ABIE53_000573at 623.548 kb on - strand, within ABIE53_000573at 623.548 kb on - strand, within ABIE53_000573at 623.628 kb on + strand, within ABIE53_000573at 623.628 kb on + strand, within ABIE53_000573at 623.629 kb on - strand, within ABIE53_000573at 623.658 kb on + strand, within ABIE53_000573at 623.658 kb on + strand, within ABIE53_000573at 623.658 kb on + strand, within ABIE53_000573at 623.658 kb on + strand, within ABIE53_000573at 623.658 kb on + strand, within ABIE53_000573at 623.659 kb on - strand, within ABIE53_000573at 623.659 kb on - strand, within ABIE53_000573at 623.662 kb on + strand, within ABIE53_000573at 623.663 kb on - strand, within ABIE53_000573at 623.663 kb on - strand, within ABIE53_000573at 623.682 kb on + strand, within ABIE53_000573at 623.682 kb on + strand, within ABIE53_000573at 623.682 kb on + strand, within ABIE53_000573at 623.682 kb on + strand, within ABIE53_000573at 623.683 kb on - strand, within ABIE53_000573at 623.782 kb on + strand, within ABIE53_000573at 623.783 kb on - strand, within ABIE53_000573at 623.868 kb on + strand, within ABIE53_000573at 623.869 kb on - strand, within ABIE53_000573at 624.088 kb on - strand, within ABIE53_000573at 624.088 kb on - strand, within ABIE53_000573at 624.088 kb on - strand, within ABIE53_000573at 624.481 kb on + strand, within ABIE53_000574at 624.481 kb on + strand, within ABIE53_000574at 624.482 kb on - strand, within ABIE53_000574at 624.630 kb on + strand, within ABIE53_000574at 624.630 kb on + strand, within ABIE53_000574at 624.631 kb on - strand, within ABIE53_000574at 624.691 kb on + strand, within ABIE53_000574at 624.942 kb on + strand, within ABIE53_000574at 624.963 kb on + strand, within ABIE53_000574at 624.963 kb on + strand, within ABIE53_000574at 624.963 kb on + strand, within ABIE53_000574at 624.964 kb on - strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.988 kb on - strand, within ABIE53_000574at 624.988 kb on - strand, within ABIE53_000574at 624.988 kb on - strand, within ABIE53_000574at 625.277 kb on - strandat 625.277 kb on - strandat 625.277 kb on - strandat 625.277 kb on - strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.435 kb on + strandat 625.435 kb on + strandat 625.436 kb on - strandat 625.436 kb on - strandat 625.436 kb on - strandat 625.453 kb on + strandat 625.454 kb on - strandat 625.880 kb on + strand, within ABIE53_000575at 625.880 kb on + strand, within ABIE53_000575at 625.881 kb on - strand, within ABIE53_000575at 626.129 kb on + strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.214 kb on - strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.263 kb on + strandat 626.264 kb on - strandat 626.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Sucrose 5 mM
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623,353 - +0.2
623,393 + +0.1
623,393 + -0.9
623,547 + ABIE53_000573 0.17 +3.5
623,547 + ABIE53_000573 0.17 +2.9
623,547 + ABIE53_000573 0.17 -0.5
623,548 - ABIE53_000573 0.17 +2.8
623,548 - ABIE53_000573 0.17 +1.0
623,628 + ABIE53_000573 0.26 +1.6
623,628 + ABIE53_000573 0.26 -0.9
623,629 - ABIE53_000573 0.26 -0.4
623,658 + ABIE53_000573 0.29 +0.6
623,658 + ABIE53_000573 0.29 -3.9
623,658 + ABIE53_000573 0.29 -1.7
623,658 + ABIE53_000573 0.29 -0.1
623,658 + ABIE53_000573 0.29 -0.4
623,659 - ABIE53_000573 0.29 +0.6
623,659 - ABIE53_000573 0.29 -0.1
623,662 + ABIE53_000573 0.29 -1.4
623,663 - ABIE53_000573 0.29 +1.2
623,663 - ABIE53_000573 0.29 +0.2
623,682 + ABIE53_000573 0.31 +0.2
623,682 + ABIE53_000573 0.31 -2.0
623,682 + ABIE53_000573 0.31 +0.2
623,682 + ABIE53_000573 0.31 +0.8
623,683 - ABIE53_000573 0.32 +1.5
623,782 + ABIE53_000573 0.42 -2.2
623,783 - ABIE53_000573 0.42 +0.6
623,868 + ABIE53_000573 0.52 +2.2
623,869 - ABIE53_000573 0.52 +1.5
624,088 - ABIE53_000573 0.75 -0.6
624,088 - ABIE53_000573 0.75 +5.0
624,088 - ABIE53_000573 0.75 +2.7
624,481 + ABIE53_000574 0.14 +0.6
624,481 + ABIE53_000574 0.14 -2.7
624,482 - ABIE53_000574 0.14 -1.1
624,630 + ABIE53_000574 0.29 -3.7
624,630 + ABIE53_000574 0.29 +0.2
624,631 - ABIE53_000574 0.30 -0.5
624,691 + ABIE53_000574 0.36 -1.2
624,942 + ABIE53_000574 0.63 -1.8
624,963 + ABIE53_000574 0.65 -0.3
624,963 + ABIE53_000574 0.65 -1.4
624,963 + ABIE53_000574 0.65 -2.4
624,964 - ABIE53_000574 0.65 +1.8
624,987 + ABIE53_000574 0.67 +0.2
624,987 + ABIE53_000574 0.67 -2.2
624,987 + ABIE53_000574 0.67 +0.6
624,987 + ABIE53_000574 0.67 -2.0
624,988 - ABIE53_000574 0.67 -2.9
624,988 - ABIE53_000574 0.67 -1.2
624,988 - ABIE53_000574 0.67 -0.6
625,277 - -2.5
625,277 - -2.5
625,277 - -1.1
625,277 - +1.3
625,278 + +0.6
625,278 + +0.5
625,278 + -1.7
625,278 + +0.9
625,278 + -0.4
625,278 + +1.6
625,278 + -0.6
625,278 + -1.0
625,278 + +1.1
625,278 + +0.3
625,278 + +0.9
625,278 + -1.8
625,278 + -0.1
625,279 - -0.5
625,279 - +0.3
625,279 - +2.1
625,279 - -1.0
625,279 - +1.4
625,279 - +0.8
625,279 - -2.9
625,279 - +1.8
625,279 - +0.4
625,279 - -1.2
625,279 - +1.2
625,279 - -0.8
625,279 - +1.2
625,279 - +1.3
625,279 - +4.4
625,435 + +0.6
625,435 + +1.3
625,436 - +0.5
625,436 - -1.8
625,436 - -1.2
625,453 + -0.1
625,454 - +1.5
625,880 + ABIE53_000575 0.44 +0.6
625,880 + ABIE53_000575 0.44 -1.6
625,881 - ABIE53_000575 0.44 +0.2
626,129 + ABIE53_000575 0.86 +1.3
626,130 - ABIE53_000575 0.86 -1.7
626,130 - ABIE53_000575 0.86 +0.7
626,130 - ABIE53_000575 0.86 +4.5
626,130 - ABIE53_000575 0.86 +1.2
626,130 - ABIE53_000575 0.86 -3.1
626,130 - ABIE53_000575 0.86 +0.9
626,214 - +0.4
626,261 + -0.3
626,261 + -2.0
626,261 + -2.0
626,261 + +1.5
626,261 + -0.1
626,261 + +0.3
626,261 + -1.1
626,262 - +0.2
626,262 - -1.8
626,262 - -2.5
626,262 - -0.4
626,262 - +0.6
626,262 - +0.5
626,263 + -0.6
626,264 - +0.2
626,264 - -1.1

Or see this region's nucleotide sequence