Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000231 and ABIE53_000232 are separated by 109 nucleotides ABIE53_000232 and ABIE53_000233 are separated by 158 nucleotides ABIE53_000233 and ABIE53_000234 are separated by 418 nucleotides
ABIE53_000231: ABIE53_000231 - cytochrome c5, at 237,625 to 238,542
_000231
ABIE53_000232: ABIE53_000232 - hypothetical protein, at 238,652 to 239,227
_000232
ABIE53_000233: ABIE53_000233 - ATP-dependent DNA helicase Rep, at 239,386 to 241,491
_000233
ABIE53_000234: ABIE53_000234 - scyllo-inositol 2-dehydrogenase (NADP+), at 241,910 to 242,959
_000234
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.540 kb on + strand at 238.540 kb on + strand at 238.540 kb on + strand at 238.540 kb on + strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.602 kb on + strand at 238.602 kb on + strand at 238.602 kb on + strand at 238.603 kb on - strand at 238.797 kb on - strand, within ABIE53_000232 at 238.843 kb on + strand, within ABIE53_000232 at 238.843 kb on + strand, within ABIE53_000232 at 238.844 kb on - strand, within ABIE53_000232 at 238.887 kb on + strand, within ABIE53_000232 at 238.887 kb on + strand, within ABIE53_000232 at 238.887 kb on + strand, within ABIE53_000232 at 238.888 kb on - strand, within ABIE53_000232 at 238.888 kb on - strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 239.016 kb on + strand, within ABIE53_000232 at 239.016 kb on + strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.161 kb on + strand, within ABIE53_000232 at 239.161 kb on + strand, within ABIE53_000232 at 239.161 kb on + strand, within ABIE53_000232 at 239.162 kb on - strand, within ABIE53_000232 at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.203 kb on - strand at 239.203 kb on - strand at 239.203 kb on - strand at 239.267 kb on + strand at 239.267 kb on + strand at 239.268 kb on - strand at 239.268 kb on - strand at 239.277 kb on - strand at 239.290 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 240.213 kb on + strand, within ABIE53_000233 at 240.214 kb on - strand, within ABIE53_000233 at 240.948 kb on - strand, within ABIE53_000233 at 240.948 kb on - strand, within ABIE53_000233 at 241.498 kb on + strand at 241.498 kb on + strand at 241.498 kb on + strand at 241.498 kb on + strand at 241.498 kb on + strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.541 kb on + strand at 241.575 kb on + strand at 241.659 kb on + strand at 241.659 kb on + strand at 241.660 kb on - strand at 241.660 kb on - strand at 241.721 kb on + strand at 241.721 kb on + strand at 241.721 kb on + strand at 241.721 kb on + strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.743 kb on + strand at 242.049 kb on - strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Sucrose 5 mM remove 238,432 + ABIE53_000231 0.88 -1.4 238,432 + ABIE53_000231 0.88 +0.5 238,432 + ABIE53_000231 0.88 +0.6 238,432 + ABIE53_000231 0.88 -1.2 238,432 + ABIE53_000231 0.88 -1.6 238,432 + ABIE53_000231 0.88 +0.3 238,432 + ABIE53_000231 0.88 -2.7 238,433 - ABIE53_000231 0.88 +1.9 238,433 - ABIE53_000231 0.88 +1.0 238,433 - ABIE53_000231 0.88 -0.1 238,433 - ABIE53_000231 0.88 +0.3 238,433 - ABIE53_000231 0.88 +0.2 238,433 - ABIE53_000231 0.88 -2.5 238,438 + ABIE53_000231 0.89 +0.9 238,438 + ABIE53_000231 0.89 +0.4 238,438 + ABIE53_000231 0.89 -0.1 238,438 + ABIE53_000231 0.89 +1.0 238,438 + ABIE53_000231 0.89 -0.6 238,438 + ABIE53_000231 0.89 +0.2 238,439 - ABIE53_000231 0.89 +0.8 238,439 - ABIE53_000231 0.89 +2.0 238,439 - ABIE53_000231 0.89 -0.8 238,439 - ABIE53_000231 0.89 -0.9 238,439 - ABIE53_000231 0.89 -0.4 238,519 + +1.1 238,519 + -0.2 238,519 + -1.0 238,519 + +2.2 238,519 + -1.8 238,519 + -2.9 238,519 + -2.5 238,520 - +0.7 238,520 - -0.6 238,520 - +0.2 238,520 - +0.7 238,520 - -3.0 238,520 - +0.7 238,520 - +2.7 238,540 + +0.8 238,540 + -0.9 238,540 + +0.1 238,540 + +2.2 238,541 - +0.5 238,541 - -1.1 238,541 - +1.6 238,541 - -2.2 238,541 - -0.1 238,602 + +1.2 238,602 + +0.3 238,602 + -0.3 238,603 - -0.6 238,797 - ABIE53_000232 0.25 +0.7 238,843 + ABIE53_000232 0.33 -0.6 238,843 + ABIE53_000232 0.33 +0.2 238,844 - ABIE53_000232 0.33 +0.6 238,887 + ABIE53_000232 0.41 -1.7 238,887 + ABIE53_000232 0.41 +0.2 238,887 + ABIE53_000232 0.41 -2.2 238,888 - ABIE53_000232 0.41 -1.7 238,888 - ABIE53_000232 0.41 +0.7 238,995 + ABIE53_000232 0.60 -2.3 238,995 + ABIE53_000232 0.60 -0.3 238,995 + ABIE53_000232 0.60 -1.8 238,995 + ABIE53_000232 0.60 +1.2 238,995 + ABIE53_000232 0.60 +2.1 238,995 + ABIE53_000232 0.60 -0.3 238,995 + ABIE53_000232 0.60 +0.7 238,995 + ABIE53_000232 0.60 -0.8 238,995 + ABIE53_000232 0.60 -0.8 238,995 + ABIE53_000232 0.60 +1.7 238,995 + ABIE53_000232 0.60 +0.1 238,995 + ABIE53_000232 0.60 -0.9 238,995 + ABIE53_000232 0.60 +1.0 238,995 + ABIE53_000232 0.60 -1.7 238,996 - ABIE53_000232 0.60 -0.1 238,996 - ABIE53_000232 0.60 -2.2 238,996 - ABIE53_000232 0.60 +0.1 238,996 - ABIE53_000232 0.60 -0.1 238,996 - ABIE53_000232 0.60 +1.9 238,996 - ABIE53_000232 0.60 +1.2 238,996 - ABIE53_000232 0.60 -0.3 238,996 - ABIE53_000232 0.60 -0.9 238,996 - ABIE53_000232 0.60 +0.1 238,996 - ABIE53_000232 0.60 -1.1 238,996 - ABIE53_000232 0.60 +2.5 238,996 - ABIE53_000232 0.60 -1.1 238,998 + ABIE53_000232 0.60 +0.7 238,998 + ABIE53_000232 0.60 -1.7 238,998 + ABIE53_000232 0.60 +0.2 238,998 + ABIE53_000232 0.60 -0.3 238,998 + ABIE53_000232 0.60 -0.6 238,998 + ABIE53_000232 0.60 -2.2 238,998 + ABIE53_000232 0.60 -2.9 238,999 - ABIE53_000232 0.60 -1.1 238,999 - ABIE53_000232 0.60 -1.3 238,999 - ABIE53_000232 0.60 -2.0 238,999 - ABIE53_000232 0.60 -1.6 238,999 - ABIE53_000232 0.60 +0.2 238,999 - ABIE53_000232 0.60 -0.8 238,999 - ABIE53_000232 0.60 -1.1 238,999 - ABIE53_000232 0.60 -3.3 238,999 - ABIE53_000232 0.60 -1.2 238,999 - ABIE53_000232 0.60 -0.3 238,999 - ABIE53_000232 0.60 -1.0 238,999 - ABIE53_000232 0.60 -1.2 239,016 + ABIE53_000232 0.63 -1.9 239,016 + ABIE53_000232 0.63 +0.7 239,017 - ABIE53_000232 0.63 -2.9 239,017 - ABIE53_000232 0.63 -0.1 239,017 - ABIE53_000232 0.63 -1.7 239,017 - ABIE53_000232 0.63 +1.2 239,161 + ABIE53_000232 0.88 -1.1 239,161 + ABIE53_000232 0.88 -2.0 239,161 + ABIE53_000232 0.88 +0.2 239,162 - ABIE53_000232 0.89 -0.5 239,181 + +2.6 239,181 + +2.2 239,181 + +1.7 239,181 + -1.5 239,181 + -2.6 239,181 + -0.3 239,182 - +1.5 239,182 - -2.8 239,182 - +0.8 239,182 - -2.8 239,182 - -0.8 239,182 - +3.0 239,202 + -1.7 239,202 + +0.7 239,202 + -1.7 239,202 + -0.8 239,202 + -0.1 239,202 + +1.7 239,203 - +0.8 239,203 - -2.7 239,203 - -0.1 239,267 + +1.0 239,267 + +0.7 239,268 - -0.8 239,268 - +4.4 239,277 - +1.2 239,290 - -0.5 239,304 - +2.2 239,304 - -3.9 239,367 + -0.8 239,367 + +1.3 239,367 + +0.7 239,367 + +0.2 239,367 + -0.3 239,367 + -0.6 240,213 + ABIE53_000233 0.39 +2.2 240,214 - ABIE53_000233 0.39 +1.3 240,948 - ABIE53_000233 0.74 +0.7 240,948 - ABIE53_000233 0.74 +1.2 241,498 + +0.9 241,498 + +2.9 241,498 + -0.6 241,498 + +1.8 241,498 + -2.9 241,499 - -0.6 241,499 - -0.8 241,499 - -2.1 241,499 - -0.5 241,499 - +0.5 241,499 - +0.2 241,499 - -3.6 241,499 - -0.0 241,499 - +1.2 241,499 - -1.9 241,541 + -1.6 241,575 + -0.6 241,659 + -2.4 241,659 + +0.2 241,660 - -2.3 241,660 - +0.2 241,721 + +0.7 241,721 + -2.0 241,721 + +1.3 241,721 + +1.4 241,722 - +2.2 241,722 - +0.2 241,722 - -0.6 241,722 - -0.6 241,722 - -2.3 241,743 + +0.5 242,049 - ABIE53_000234 0.13 -2.6 242,351 + ABIE53_000234 0.42 -0.1 242,351 + ABIE53_000234 0.42 -0.8 242,351 + ABIE53_000234 0.42 +1.7 242,351 + ABIE53_000234 0.42 +0.5 242,351 + ABIE53_000234 0.42 +1.2 242,351 + ABIE53_000234 0.42 -0.4 242,352 - ABIE53_000234 0.42 +3.2 242,352 - ABIE53_000234 0.42 -1.1 242,352 - ABIE53_000234 0.42 +0.9 242,352 - ABIE53_000234 0.42 -0.9 242,352 - ABIE53_000234 0.42 -0.1 242,352 - ABIE53_000234 0.42 +0.4 242,352 - ABIE53_000234 0.42 -0.8 242,352 - ABIE53_000234 0.42 +0.8
Or see this region's nucleotide sequence