Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23280 and ABZR87_RS23285 are separated by 91 nucleotides ABZR87_RS23285 and ABZR87_RS23290 are separated by 64 nucleotides ABZR87_RS23290 and ABZR87_RS23295 are separated by 137 nucleotides ABZR87_RS23295 and ABZR87_RS23300 overlap by 4 nucleotides ABZR87_RS23300 and ABZR87_RS23305 are separated by 7 nucleotides
ABZR87_RS23280: ABZR87_RS23280 - TetR/AcrR family transcriptional regulator, at 1,588,847 to 1,589,422
_RS23280
ABZR87_RS23285: ABZR87_RS23285 - SDR family oxidoreductase, at 1,589,514 to 1,590,248
_RS23285
ABZR87_RS23290: ABZR87_RS23290 - 2-hydroxychromene-2-carboxylate isomerase, at 1,590,313 to 1,590,900
_RS23290
ABZR87_RS23295: ABZR87_RS23295 - hypothetical protein, at 1,591,038 to 1,591,322
_RS23295
ABZR87_RS23300: ABZR87_RS23300 - hypothetical protein, at 1,591,319 to 1,591,585
_RS23300
ABZR87_RS23305: ABZR87_RS23305 - PepSY-associated TM helix domain-containing protein, at 1,591,593 to 1,593,215
_RS23305
Position (kb)
1590
1591 Strain fitness (log2 ratio)
-2
-1
0
1 at 1589.415 kb on + strand at 1589.415 kb on + strand at 1589.604 kb on + strand, within ABZR87_RS23285 at 1589.604 kb on + strand, within ABZR87_RS23285 at 1589.604 kb on + strand, within ABZR87_RS23285 at 1589.604 kb on + strand, within ABZR87_RS23285 at 1589.604 kb on + strand, within ABZR87_RS23285 at 1589.604 kb on + strand, within ABZR87_RS23285 at 1589.605 kb on - strand, within ABZR87_RS23285 at 1589.605 kb on - strand, within ABZR87_RS23285 at 1589.605 kb on - strand, within ABZR87_RS23285 at 1589.832 kb on + strand, within ABZR87_RS23285 at 1589.832 kb on + strand, within ABZR87_RS23285 at 1589.832 kb on + strand, within ABZR87_RS23285 at 1589.833 kb on - strand, within ABZR87_RS23285 at 1590.046 kb on + strand, within ABZR87_RS23285 at 1590.046 kb on + strand, within ABZR87_RS23285 at 1590.046 kb on + strand, within ABZR87_RS23285 at 1590.047 kb on - strand, within ABZR87_RS23285 at 1590.117 kb on + strand, within ABZR87_RS23285 at 1590.171 kb on + strand, within ABZR87_RS23285 at 1590.171 kb on + strand, within ABZR87_RS23285 at 1590.171 kb on + strand, within ABZR87_RS23285 at 1590.177 kb on + strand at 1590.177 kb on + strand at 1590.177 kb on + strand at 1590.177 kb on + strand at 1590.178 kb on - strand at 1590.178 kb on - strand at 1590.178 kb on - strand at 1590.178 kb on - strand at 1590.178 kb on - strand at 1590.246 kb on + strand at 1590.247 kb on - strand at 1590.247 kb on - strand at 1590.247 kb on - strand at 1590.352 kb on + strand at 1590.352 kb on + strand at 1590.352 kb on + strand at 1590.353 kb on - strand at 1590.353 kb on - strand at 1590.358 kb on + strand at 1590.358 kb on + strand at 1590.358 kb on + strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.359 kb on - strand at 1590.367 kb on + strand at 1590.368 kb on - strand at 1590.368 kb on - strand at 1590.368 kb on - strand at 1590.440 kb on + strand, within ABZR87_RS23290 at 1590.441 kb on - strand, within ABZR87_RS23290 at 1590.494 kb on - strand, within ABZR87_RS23290 at 1590.635 kb on - strand, within ABZR87_RS23290 at 1591.019 kb on - strand at 1591.023 kb on - strand at 1591.046 kb on + strand at 1591.047 kb on - strand at 1591.087 kb on - strand, within ABZR87_RS23295 at 1591.087 kb on - strand, within ABZR87_RS23295 at 1591.609 kb on + strand at 1591.609 kb on + strand at 1591.609 kb on + strand at 1591.609 kb on + strand at 1591.609 kb on + strand at 1591.610 kb on - strand at 1591.610 kb on - strand at 1591.610 kb on - strand at 1591.610 kb on - strand at 1591.610 kb on - strand at 1591.611 kb on - strand at 1591.631 kb on + strand at 1591.631 kb on + strand at 1591.631 kb on + strand at 1591.631 kb on + strand at 1591.631 kb on + strand at 1591.631 kb on + strand at 1591.632 kb on - strand at 1591.632 kb on - strand at 1591.696 kb on + strand at 1591.697 kb on - strand at 1591.697 kb on - strand at 1591.697 kb on - strand at 1591.697 kb on - strand at 1591.831 kb on - strand, within ABZR87_RS23305 at 1591.831 kb on - strand, within ABZR87_RS23305 at 1591.831 kb on - strand, within ABZR87_RS23305 at 1591.831 kb on - strand, within ABZR87_RS23305 at 1591.872 kb on + strand, within ABZR87_RS23305 at 1591.873 kb on - strand, within ABZR87_RS23305 at 1591.873 kb on - strand, within ABZR87_RS23305
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,589,415 + +0.3 1,589,415 + -0.7 1,589,604 + ABZR87_RS23285 0.12 -0.2 1,589,604 + ABZR87_RS23285 0.12 -0.6 1,589,604 + ABZR87_RS23285 0.12 -0.1 1,589,604 + ABZR87_RS23285 0.12 -0.6 1,589,604 + ABZR87_RS23285 0.12 +1.4 1,589,604 + ABZR87_RS23285 0.12 -0.4 1,589,605 - ABZR87_RS23285 0.12 +0.1 1,589,605 - ABZR87_RS23285 0.12 +0.4 1,589,605 - ABZR87_RS23285 0.12 -0.2 1,589,832 + ABZR87_RS23285 0.43 +0.2 1,589,832 + ABZR87_RS23285 0.43 -1.1 1,589,832 + ABZR87_RS23285 0.43 -0.7 1,589,833 - ABZR87_RS23285 0.43 -0.3 1,590,046 + ABZR87_RS23285 0.72 -1.0 1,590,046 + ABZR87_RS23285 0.72 -0.9 1,590,046 + ABZR87_RS23285 0.72 -1.4 1,590,047 - ABZR87_RS23285 0.73 +1.5 1,590,117 + ABZR87_RS23285 0.82 -1.5 1,590,171 + ABZR87_RS23285 0.89 +0.2 1,590,171 + ABZR87_RS23285 0.89 +0.4 1,590,171 + ABZR87_RS23285 0.89 +0.6 1,590,177 + -0.2 1,590,177 + -0.3 1,590,177 + -2.1 1,590,177 + -0.1 1,590,178 - -0.3 1,590,178 - -0.8 1,590,178 - -0.9 1,590,178 - -1.4 1,590,178 - -0.2 1,590,246 + +0.2 1,590,247 - -0.6 1,590,247 - +0.9 1,590,247 - -0.3 1,590,352 + +0.8 1,590,352 + +1.3 1,590,352 + -0.5 1,590,353 - -0.1 1,590,353 - -0.6 1,590,358 + +0.6 1,590,358 + -0.1 1,590,358 + +0.1 1,590,359 - -0.3 1,590,359 - +0.1 1,590,359 - +1.2 1,590,359 - -1.5 1,590,359 - -0.2 1,590,367 + -0.6 1,590,368 - -0.6 1,590,368 - +0.4 1,590,368 - -0.4 1,590,440 + ABZR87_RS23290 0.22 -2.5 1,590,441 - ABZR87_RS23290 0.22 -1.0 1,590,494 - ABZR87_RS23290 0.31 -0.1 1,590,635 - ABZR87_RS23290 0.55 -1.8 1,591,019 - +0.4 1,591,023 - -0.7 1,591,046 + +0.4 1,591,047 - +0.4 1,591,087 - ABZR87_RS23295 0.17 +0.5 1,591,087 - ABZR87_RS23295 0.17 -0.2 1,591,609 + -0.2 1,591,609 + -0.8 1,591,609 + +0.6 1,591,609 + +0.2 1,591,609 + +0.0 1,591,610 - -1.9 1,591,610 - +0.3 1,591,610 - +0.5 1,591,610 - +1.0 1,591,610 - -0.9 1,591,611 - +1.7 1,591,631 + -0.7 1,591,631 + -0.7 1,591,631 + +0.4 1,591,631 + -0.1 1,591,631 + -0.8 1,591,631 + +0.8 1,591,632 - -0.7 1,591,632 - -0.4 1,591,696 + -0.1 1,591,697 - +0.0 1,591,697 - +1.5 1,591,697 - -0.6 1,591,697 - +0.4 1,591,831 - ABZR87_RS23305 0.15 +1.0 1,591,831 - ABZR87_RS23305 0.15 +0.7 1,591,831 - ABZR87_RS23305 0.15 -0.2 1,591,831 - ABZR87_RS23305 0.15 +0.1 1,591,872 + ABZR87_RS23305 0.17 +0.6 1,591,873 - ABZR87_RS23305 0.17 +0.3 1,591,873 - ABZR87_RS23305 0.17 -0.3
Or see this region's nucleotide sequence