Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23110 and ABZR87_RS23115 are separated by 3 nucleotides ABZR87_RS23115 and ABZR87_RS23120 are separated by 344 nucleotides
ABZR87_RS23110: ABZR87_RS23110 - efflux transporter outer membrane subunit, at 1,546,886 to 1,548,355
_RS23110
ABZR87_RS23115: ABZR87_RS23115 - hypothetical protein, at 1,548,359 to 1,549,288
_RS23115
ABZR87_RS23120: ABZR87_RS23120 - D-aminoacylase, at 1,549,633 to 1,551,225
_RS23120
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1547.450 kb on + strand, within ABZR87_RS23110 at 1547.451 kb on - strand, within ABZR87_RS23110 at 1547.642 kb on + strand, within ABZR87_RS23110 at 1547.643 kb on - strand, within ABZR87_RS23110 at 1548.002 kb on + strand, within ABZR87_RS23110 at 1548.162 kb on - strand, within ABZR87_RS23110 at 1548.162 kb on - strand, within ABZR87_RS23110 at 1548.560 kb on + strand, within ABZR87_RS23115 at 1548.560 kb on + strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.561 kb on - strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.618 kb on + strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.619 kb on - strand, within ABZR87_RS23115 at 1548.840 kb on + strand, within ABZR87_RS23115 at 1548.840 kb on + strand, within ABZR87_RS23115 at 1548.841 kb on - strand, within ABZR87_RS23115 at 1548.841 kb on - strand, within ABZR87_RS23115 at 1548.873 kb on + strand, within ABZR87_RS23115 at 1548.874 kb on - strand, within ABZR87_RS23115 at 1549.020 kb on + strand, within ABZR87_RS23115 at 1549.234 kb on - strand at 1549.234 kb on - strand at 1549.390 kb on + strand at 1549.461 kb on + strand at 1549.461 kb on + strand at 1549.461 kb on + strand at 1549.462 kb on - strand at 1549.501 kb on + strand at 1549.512 kb on + strand at 1549.512 kb on + strand at 1549.512 kb on + strand at 1549.513 kb on - strand at 1549.513 kb on - strand at 1549.513 kb on - strand at 1549.558 kb on - strand at 1549.558 kb on - strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.602 kb on + strand at 1549.603 kb on - strand at 1549.603 kb on - strand at 1549.632 kb on + strand at 1549.900 kb on - strand, within ABZR87_RS23120 at 1549.911 kb on + strand, within ABZR87_RS23120 at 1549.912 kb on - strand, within ABZR87_RS23120 at 1549.912 kb on - strand, within ABZR87_RS23120 at 1549.921 kb on + strand, within ABZR87_RS23120 at 1549.922 kb on - strand, within ABZR87_RS23120 at 1549.963 kb on + strand, within ABZR87_RS23120 at 1550.242 kb on + strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.243 kb on - strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.244 kb on + strand, within ABZR87_RS23120 at 1550.245 kb on - strand, within ABZR87_RS23120
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,547,450 + ABZR87_RS23110 0.38 -0.6 1,547,451 - ABZR87_RS23110 0.38 -0.2 1,547,642 + ABZR87_RS23110 0.51 -0.9 1,547,643 - ABZR87_RS23110 0.51 -0.1 1,548,002 + ABZR87_RS23110 0.76 +0.3 1,548,162 - ABZR87_RS23110 0.87 -0.5 1,548,162 - ABZR87_RS23110 0.87 +0.2 1,548,560 + ABZR87_RS23115 0.22 -0.6 1,548,560 + ABZR87_RS23115 0.22 -0.8 1,548,561 - ABZR87_RS23115 0.22 -1.0 1,548,561 - ABZR87_RS23115 0.22 -1.8 1,548,561 - ABZR87_RS23115 0.22 +0.4 1,548,561 - ABZR87_RS23115 0.22 -2.8 1,548,561 - ABZR87_RS23115 0.22 -1.0 1,548,618 + ABZR87_RS23115 0.28 -1.0 1,548,618 + ABZR87_RS23115 0.28 -0.2 1,548,618 + ABZR87_RS23115 0.28 -0.6 1,548,618 + ABZR87_RS23115 0.28 +0.0 1,548,618 + ABZR87_RS23115 0.28 -0.1 1,548,619 - ABZR87_RS23115 0.28 -1.8 1,548,619 - ABZR87_RS23115 0.28 +0.7 1,548,619 - ABZR87_RS23115 0.28 -0.2 1,548,619 - ABZR87_RS23115 0.28 -0.4 1,548,619 - ABZR87_RS23115 0.28 -0.0 1,548,619 - ABZR87_RS23115 0.28 -1.1 1,548,619 - ABZR87_RS23115 0.28 -0.0 1,548,840 + ABZR87_RS23115 0.52 -1.2 1,548,840 + ABZR87_RS23115 0.52 -0.5 1,548,841 - ABZR87_RS23115 0.52 -1.2 1,548,841 - ABZR87_RS23115 0.52 -1.2 1,548,873 + ABZR87_RS23115 0.55 -0.2 1,548,874 - ABZR87_RS23115 0.55 -1.6 1,549,020 + ABZR87_RS23115 0.71 -1.7 1,549,234 - -0.2 1,549,234 - -0.5 1,549,390 + +0.2 1,549,461 + -0.3 1,549,461 + +0.2 1,549,461 + -0.8 1,549,462 - +1.6 1,549,501 + -0.0 1,549,512 + +0.8 1,549,512 + -0.4 1,549,512 + -0.5 1,549,513 - +1.8 1,549,513 - +0.8 1,549,513 - +1.8 1,549,558 - +2.3 1,549,558 - +1.0 1,549,602 + +0.7 1,549,602 + +0.8 1,549,602 + -0.3 1,549,602 + +0.6 1,549,602 + -2.8 1,549,602 + -0.2 1,549,603 - +1.2 1,549,603 - +1.5 1,549,632 + +0.3 1,549,900 - ABZR87_RS23120 0.17 +0.3 1,549,911 + ABZR87_RS23120 0.17 +0.0 1,549,912 - ABZR87_RS23120 0.18 +1.0 1,549,912 - ABZR87_RS23120 0.18 +0.8 1,549,921 + ABZR87_RS23120 0.18 -0.3 1,549,922 - ABZR87_RS23120 0.18 +0.4 1,549,963 + ABZR87_RS23120 0.21 +0.3 1,550,242 + ABZR87_RS23120 0.38 -0.5 1,550,243 - ABZR87_RS23120 0.38 +0.7 1,550,243 - ABZR87_RS23120 0.38 +0.8 1,550,243 - ABZR87_RS23120 0.38 +1.1 1,550,243 - ABZR87_RS23120 0.38 +1.0 1,550,243 - ABZR87_RS23120 0.38 +0.5 1,550,244 + ABZR87_RS23120 0.38 -0.3 1,550,244 + ABZR87_RS23120 0.38 +1.0 1,550,244 + ABZR87_RS23120 0.38 +0.1 1,550,244 + ABZR87_RS23120 0.38 -0.7 1,550,245 - ABZR87_RS23120 0.38 +0.2
Or see this region's nucleotide sequence