Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23115

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23110 and ABZR87_RS23115 are separated by 3 nucleotidesABZR87_RS23115 and ABZR87_RS23120 are separated by 344 nucleotides ABZR87_RS23110: ABZR87_RS23110 - efflux transporter outer membrane subunit, at 1,546,886 to 1,548,355 _RS23110 ABZR87_RS23115: ABZR87_RS23115 - hypothetical protein, at 1,548,359 to 1,549,288 _RS23115 ABZR87_RS23120: ABZR87_RS23120 - D-aminoacylase, at 1,549,633 to 1,551,225 _RS23120 Position (kb) 1548 1549 1550Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1547.450 kb on + strand, within ABZR87_RS23110at 1547.451 kb on - strand, within ABZR87_RS23110at 1547.642 kb on + strand, within ABZR87_RS23110at 1547.643 kb on - strand, within ABZR87_RS23110at 1548.002 kb on + strand, within ABZR87_RS23110at 1548.162 kb on - strand, within ABZR87_RS23110at 1548.162 kb on - strand, within ABZR87_RS23110at 1548.560 kb on + strand, within ABZR87_RS23115at 1548.560 kb on + strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.561 kb on - strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.618 kb on + strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.619 kb on - strand, within ABZR87_RS23115at 1548.840 kb on + strand, within ABZR87_RS23115at 1548.840 kb on + strand, within ABZR87_RS23115at 1548.841 kb on - strand, within ABZR87_RS23115at 1548.841 kb on - strand, within ABZR87_RS23115at 1548.873 kb on + strand, within ABZR87_RS23115at 1548.874 kb on - strand, within ABZR87_RS23115at 1549.020 kb on + strand, within ABZR87_RS23115at 1549.234 kb on - strandat 1549.234 kb on - strandat 1549.390 kb on + strandat 1549.461 kb on + strandat 1549.461 kb on + strandat 1549.461 kb on + strandat 1549.462 kb on - strandat 1549.501 kb on + strandat 1549.512 kb on + strandat 1549.512 kb on + strandat 1549.512 kb on + strandat 1549.513 kb on - strandat 1549.513 kb on - strandat 1549.513 kb on - strandat 1549.558 kb on - strandat 1549.558 kb on - strandat 1549.602 kb on + strandat 1549.602 kb on + strandat 1549.602 kb on + strandat 1549.602 kb on + strandat 1549.602 kb on + strandat 1549.602 kb on + strandat 1549.603 kb on - strandat 1549.603 kb on - strandat 1549.632 kb on + strandat 1549.900 kb on - strand, within ABZR87_RS23120at 1549.911 kb on + strand, within ABZR87_RS23120at 1549.912 kb on - strand, within ABZR87_RS23120at 1549.912 kb on - strand, within ABZR87_RS23120at 1549.921 kb on + strand, within ABZR87_RS23120at 1549.922 kb on - strand, within ABZR87_RS23120at 1549.963 kb on + strand, within ABZR87_RS23120at 1550.242 kb on + strand, within ABZR87_RS23120at 1550.243 kb on - strand, within ABZR87_RS23120at 1550.243 kb on - strand, within ABZR87_RS23120at 1550.243 kb on - strand, within ABZR87_RS23120at 1550.243 kb on - strand, within ABZR87_RS23120at 1550.243 kb on - strand, within ABZR87_RS23120at 1550.244 kb on + strand, within ABZR87_RS23120at 1550.244 kb on + strand, within ABZR87_RS23120at 1550.244 kb on + strand, within ABZR87_RS23120at 1550.244 kb on + strand, within ABZR87_RS23120at 1550.245 kb on - strand, within ABZR87_RS23120

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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1,547,450 + ABZR87_RS23110 0.38 -0.6
1,547,451 - ABZR87_RS23110 0.38 -0.2
1,547,642 + ABZR87_RS23110 0.51 -0.9
1,547,643 - ABZR87_RS23110 0.51 -0.1
1,548,002 + ABZR87_RS23110 0.76 +0.3
1,548,162 - ABZR87_RS23110 0.87 -0.5
1,548,162 - ABZR87_RS23110 0.87 +0.2
1,548,560 + ABZR87_RS23115 0.22 -0.6
1,548,560 + ABZR87_RS23115 0.22 -0.8
1,548,561 - ABZR87_RS23115 0.22 -1.0
1,548,561 - ABZR87_RS23115 0.22 -1.8
1,548,561 - ABZR87_RS23115 0.22 +0.4
1,548,561 - ABZR87_RS23115 0.22 -2.8
1,548,561 - ABZR87_RS23115 0.22 -1.0
1,548,618 + ABZR87_RS23115 0.28 -1.0
1,548,618 + ABZR87_RS23115 0.28 -0.2
1,548,618 + ABZR87_RS23115 0.28 -0.6
1,548,618 + ABZR87_RS23115 0.28 +0.0
1,548,618 + ABZR87_RS23115 0.28 -0.1
1,548,619 - ABZR87_RS23115 0.28 -1.8
1,548,619 - ABZR87_RS23115 0.28 +0.7
1,548,619 - ABZR87_RS23115 0.28 -0.2
1,548,619 - ABZR87_RS23115 0.28 -0.4
1,548,619 - ABZR87_RS23115 0.28 -0.0
1,548,619 - ABZR87_RS23115 0.28 -1.1
1,548,619 - ABZR87_RS23115 0.28 -0.0
1,548,840 + ABZR87_RS23115 0.52 -1.2
1,548,840 + ABZR87_RS23115 0.52 -0.5
1,548,841 - ABZR87_RS23115 0.52 -1.2
1,548,841 - ABZR87_RS23115 0.52 -1.2
1,548,873 + ABZR87_RS23115 0.55 -0.2
1,548,874 - ABZR87_RS23115 0.55 -1.6
1,549,020 + ABZR87_RS23115 0.71 -1.7
1,549,234 - -0.2
1,549,234 - -0.5
1,549,390 + +0.2
1,549,461 + -0.3
1,549,461 + +0.2
1,549,461 + -0.8
1,549,462 - +1.6
1,549,501 + -0.0
1,549,512 + +0.8
1,549,512 + -0.4
1,549,512 + -0.5
1,549,513 - +1.8
1,549,513 - +0.8
1,549,513 - +1.8
1,549,558 - +2.3
1,549,558 - +1.0
1,549,602 + +0.7
1,549,602 + +0.8
1,549,602 + -0.3
1,549,602 + +0.6
1,549,602 + -2.8
1,549,602 + -0.2
1,549,603 - +1.2
1,549,603 - +1.5
1,549,632 + +0.3
1,549,900 - ABZR87_RS23120 0.17 +0.3
1,549,911 + ABZR87_RS23120 0.17 +0.0
1,549,912 - ABZR87_RS23120 0.18 +1.0
1,549,912 - ABZR87_RS23120 0.18 +0.8
1,549,921 + ABZR87_RS23120 0.18 -0.3
1,549,922 - ABZR87_RS23120 0.18 +0.4
1,549,963 + ABZR87_RS23120 0.21 +0.3
1,550,242 + ABZR87_RS23120 0.38 -0.5
1,550,243 - ABZR87_RS23120 0.38 +0.7
1,550,243 - ABZR87_RS23120 0.38 +0.8
1,550,243 - ABZR87_RS23120 0.38 +1.1
1,550,243 - ABZR87_RS23120 0.38 +1.0
1,550,243 - ABZR87_RS23120 0.38 +0.5
1,550,244 + ABZR87_RS23120 0.38 -0.3
1,550,244 + ABZR87_RS23120 0.38 +1.0
1,550,244 + ABZR87_RS23120 0.38 +0.1
1,550,244 + ABZR87_RS23120 0.38 -0.7
1,550,245 - ABZR87_RS23120 0.38 +0.2

Or see this region's nucleotide sequence