Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23090 and ABZR87_RS23095 are separated by 187 nucleotides ABZR87_RS23095 and ABZR87_RS23100 are separated by 171 nucleotides
ABZR87_RS23090: ABZR87_RS23090 - p-hydroxycinnamoyl CoA hydratase/lyase, at 1,540,714 to 1,541,547
_RS23090
ABZR87_RS23095: ABZR87_RS23095 - MarR family transcriptional regulator, at 1,541,735 to 1,542,208
_RS23095
ABZR87_RS23100: ABZR87_RS23100 - efflux RND transporter permease subunit, at 1,542,380 to 1,545,586
_RS23100
Position (kb)
1541
1542
1543 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1540.832 kb on + strand, within ABZR87_RS23090 at 1540.838 kb on + strand, within ABZR87_RS23090 at 1540.839 kb on - strand, within ABZR87_RS23090 at 1540.839 kb on - strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.039 kb on + strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.040 kb on - strand, within ABZR87_RS23090 at 1541.042 kb on + strand, within ABZR87_RS23090 at 1541.042 kb on + strand, within ABZR87_RS23090 at 1541.042 kb on + strand, within ABZR87_RS23090 at 1541.042 kb on + strand, within ABZR87_RS23090 at 1541.043 kb on - strand, within ABZR87_RS23090 at 1541.234 kb on + strand, within ABZR87_RS23090 at 1541.234 kb on + strand, within ABZR87_RS23090 at 1541.234 kb on + strand, within ABZR87_RS23090 at 1541.235 kb on - strand, within ABZR87_RS23090 at 1541.235 kb on - strand, within ABZR87_RS23090 at 1541.235 kb on - strand, within ABZR87_RS23090 at 1541.324 kb on + strand, within ABZR87_RS23090 at 1541.324 kb on + strand, within ABZR87_RS23090 at 1541.324 kb on + strand, within ABZR87_RS23090 at 1541.324 kb on + strand, within ABZR87_RS23090 at 1541.325 kb on - strand, within ABZR87_RS23090 at 1541.325 kb on - strand, within ABZR87_RS23090 at 1541.325 kb on - strand, within ABZR87_RS23090 at 1541.325 kb on - strand, within ABZR87_RS23090 at 1541.537 kb on + strand at 1541.538 kb on - strand at 1541.538 kb on - strand at 1541.656 kb on + strand at 1541.656 kb on + strand at 1541.657 kb on - strand at 1541.657 kb on - strand at 1541.690 kb on + strand at 1541.690 kb on + strand at 1541.691 kb on - strand at 1541.691 kb on - strand at 1541.691 kb on - strand at 1541.691 kb on - strand at 1541.691 kb on - strand at 1541.691 kb on - strand at 1541.712 kb on + strand at 1541.712 kb on + strand at 1541.712 kb on + strand at 1541.712 kb on + strand at 1541.712 kb on + strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.713 kb on - strand at 1541.813 kb on + strand, within ABZR87_RS23095 at 1542.251 kb on + strand at 1542.275 kb on + strand at 1542.299 kb on - strand at 1542.299 kb on - strand at 1542.299 kb on - strand at 1542.299 kb on - strand at 1542.473 kb on - strand at 1542.530 kb on + strand at 1542.530 kb on + strand at 1542.530 kb on + strand at 1542.531 kb on - strand at 1542.531 kb on - strand at 1542.773 kb on + strand, within ABZR87_RS23100 at 1542.774 kb on - strand, within ABZR87_RS23100 at 1542.989 kb on - strand, within ABZR87_RS23100 at 1543.142 kb on + strand, within ABZR87_RS23100
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,540,832 + ABZR87_RS23090 0.14 +1.2 1,540,838 + ABZR87_RS23090 0.15 -0.1 1,540,839 - ABZR87_RS23090 0.15 +0.9 1,540,839 - ABZR87_RS23090 0.15 -0.3 1,541,039 + ABZR87_RS23090 0.39 +0.1 1,541,039 + ABZR87_RS23090 0.39 +0.5 1,541,039 + ABZR87_RS23090 0.39 +0.9 1,541,039 + ABZR87_RS23090 0.39 -0.4 1,541,039 + ABZR87_RS23090 0.39 -0.5 1,541,039 + ABZR87_RS23090 0.39 -0.8 1,541,039 + ABZR87_RS23090 0.39 -2.2 1,541,039 + ABZR87_RS23090 0.39 +2.8 1,541,039 + ABZR87_RS23090 0.39 +0.3 1,541,039 + ABZR87_RS23090 0.39 -1.2 1,541,039 + ABZR87_RS23090 0.39 -1.0 1,541,039 + ABZR87_RS23090 0.39 -3.1 1,541,040 - ABZR87_RS23090 0.39 -0.2 1,541,040 - ABZR87_RS23090 0.39 -0.6 1,541,040 - ABZR87_RS23090 0.39 -1.0 1,541,040 - ABZR87_RS23090 0.39 +0.0 1,541,040 - ABZR87_RS23090 0.39 -0.2 1,541,040 - ABZR87_RS23090 0.39 -0.5 1,541,040 - ABZR87_RS23090 0.39 -1.1 1,541,040 - ABZR87_RS23090 0.39 +0.7 1,541,040 - ABZR87_RS23090 0.39 +0.0 1,541,040 - ABZR87_RS23090 0.39 -0.2 1,541,040 - ABZR87_RS23090 0.39 -0.1 1,541,042 + ABZR87_RS23090 0.39 +0.0 1,541,042 + ABZR87_RS23090 0.39 -1.6 1,541,042 + ABZR87_RS23090 0.39 +0.8 1,541,042 + ABZR87_RS23090 0.39 +0.6 1,541,043 - ABZR87_RS23090 0.39 -0.2 1,541,234 + ABZR87_RS23090 0.62 -0.6 1,541,234 + ABZR87_RS23090 0.62 +0.1 1,541,234 + ABZR87_RS23090 0.62 -1.4 1,541,235 - ABZR87_RS23090 0.62 -0.3 1,541,235 - ABZR87_RS23090 0.62 -0.5 1,541,235 - ABZR87_RS23090 0.62 -1.6 1,541,324 + ABZR87_RS23090 0.73 +0.7 1,541,324 + ABZR87_RS23090 0.73 +1.5 1,541,324 + ABZR87_RS23090 0.73 +0.8 1,541,324 + ABZR87_RS23090 0.73 +0.2 1,541,325 - ABZR87_RS23090 0.73 -0.7 1,541,325 - ABZR87_RS23090 0.73 -0.9 1,541,325 - ABZR87_RS23090 0.73 -0.3 1,541,325 - ABZR87_RS23090 0.73 +0.3 1,541,537 + -1.1 1,541,538 - -0.3 1,541,538 - +0.1 1,541,656 + +0.2 1,541,656 + -0.4 1,541,657 - -2.6 1,541,657 - -0.6 1,541,690 + -0.5 1,541,690 + +0.6 1,541,691 - -0.1 1,541,691 - +0.4 1,541,691 - +0.2 1,541,691 - +1.4 1,541,691 - +0.6 1,541,691 - -1.2 1,541,712 + -0.3 1,541,712 + -0.8 1,541,712 + -1.0 1,541,712 + +0.9 1,541,712 + +0.1 1,541,713 - +0.5 1,541,713 - +0.1 1,541,713 - -0.8 1,541,713 - -0.5 1,541,713 - +1.3 1,541,713 - -0.6 1,541,713 - -0.1 1,541,713 - -0.1 1,541,713 - +0.2 1,541,713 - +0.9 1,541,713 - +0.3 1,541,813 + ABZR87_RS23095 0.16 -1.2 1,542,251 + -0.3 1,542,275 + +0.1 1,542,299 - -0.2 1,542,299 - -0.0 1,542,299 - -0.4 1,542,299 - -0.6 1,542,473 - -0.6 1,542,530 + +0.1 1,542,530 + -0.6 1,542,530 + +0.5 1,542,531 - +0.3 1,542,531 - +0.5 1,542,773 + ABZR87_RS23100 0.12 +1.4 1,542,774 - ABZR87_RS23100 0.12 -0.3 1,542,989 - ABZR87_RS23100 0.19 +0.4 1,543,142 + ABZR87_RS23100 0.24 -1.1
Or see this region's nucleotide sequence