Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22065 and ABZR87_RS22070 overlap by 11 nucleotides ABZR87_RS22070 and ABZR87_RS22075 are separated by 35 nucleotides ABZR87_RS22075 and ABZR87_RS22080 overlap by 4 nucleotides
ABZR87_RS22065: ABZR87_RS22065 - flagellar protein export ATPase FliI, at 1,319,112 to 1,320,548
_RS22065
ABZR87_RS22070: ABZR87_RS22070 - flagellar assembly protein FliH, at 1,320,538 to 1,321,275
_RS22070
ABZR87_RS22075: ABZR87_RS22075 - flagellar motor switch protein FliG, at 1,321,311 to 1,322,303
_RS22075
ABZR87_RS22080: ABZR87_RS22080 - flagellar basal-body MS-ring/collar protein FliF, at 1,322,300 to 1,324,135
_RS22080
Position (kb)
1321
1322
1323 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1321.232 kb on + strand at 1321.318 kb on + strand at 1321.318 kb on + strand at 1321.318 kb on + strand at 1321.319 kb on - strand at 1321.319 kb on - strand at 1321.352 kb on - strand at 1321.870 kb on + strand, within ABZR87_RS22075 at 1321.870 kb on + strand, within ABZR87_RS22075 at 1322.083 kb on + strand, within ABZR87_RS22075 at 1322.083 kb on + strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.084 kb on - strand, within ABZR87_RS22075 at 1322.308 kb on + strand at 1322.637 kb on + strand, within ABZR87_RS22080 at 1322.638 kb on - strand, within ABZR87_RS22080 at 1322.638 kb on - strand, within ABZR87_RS22080 at 1322.638 kb on - strand, within ABZR87_RS22080 at 1322.658 kb on + strand, within ABZR87_RS22080 at 1322.659 kb on - strand, within ABZR87_RS22080 at 1322.853 kb on + strand, within ABZR87_RS22080 at 1322.853 kb on + strand, within ABZR87_RS22080 at 1322.853 kb on + strand, within ABZR87_RS22080 at 1322.854 kb on - strand, within ABZR87_RS22080 at 1322.854 kb on - strand, within ABZR87_RS22080 at 1322.885 kb on + strand, within ABZR87_RS22080 at 1322.886 kb on - strand, within ABZR87_RS22080 at 1322.886 kb on - strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.934 kb on + strand, within ABZR87_RS22080 at 1322.935 kb on - strand, within ABZR87_RS22080 at 1322.935 kb on - strand, within ABZR87_RS22080 at 1323.166 kb on + strand, within ABZR87_RS22080 at 1323.213 kb on + strand, within ABZR87_RS22080 at 1323.214 kb on - strand, within ABZR87_RS22080 at 1323.261 kb on - strand, within ABZR87_RS22080
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,321,232 + -1.5 1,321,318 + -0.5 1,321,318 + -1.1 1,321,318 + +0.1 1,321,319 - -1.3 1,321,319 - -1.5 1,321,352 - -1.0 1,321,870 + ABZR87_RS22075 0.56 -1.0 1,321,870 + ABZR87_RS22075 0.56 -2.1 1,322,083 + ABZR87_RS22075 0.78 -1.2 1,322,083 + ABZR87_RS22075 0.78 -0.3 1,322,084 - ABZR87_RS22075 0.78 -1.4 1,322,084 - ABZR87_RS22075 0.78 -1.7 1,322,084 - ABZR87_RS22075 0.78 -3.7 1,322,084 - ABZR87_RS22075 0.78 -0.8 1,322,308 + -0.7 1,322,637 + ABZR87_RS22080 0.18 -0.5 1,322,638 - ABZR87_RS22080 0.18 -1.5 1,322,638 - ABZR87_RS22080 0.18 -1.7 1,322,638 - ABZR87_RS22080 0.18 -2.0 1,322,658 + ABZR87_RS22080 0.19 +0.1 1,322,659 - ABZR87_RS22080 0.20 -1.2 1,322,853 + ABZR87_RS22080 0.30 -1.4 1,322,853 + ABZR87_RS22080 0.30 -0.2 1,322,853 + ABZR87_RS22080 0.30 -1.7 1,322,854 - ABZR87_RS22080 0.30 -0.5 1,322,854 - ABZR87_RS22080 0.30 -1.6 1,322,885 + ABZR87_RS22080 0.32 -0.3 1,322,886 - ABZR87_RS22080 0.32 -1.9 1,322,886 - ABZR87_RS22080 0.32 -2.3 1,322,934 + ABZR87_RS22080 0.35 -0.0 1,322,934 + ABZR87_RS22080 0.35 -0.2 1,322,934 + ABZR87_RS22080 0.35 -3.1 1,322,934 + ABZR87_RS22080 0.35 -1.6 1,322,935 - ABZR87_RS22080 0.35 -1.4 1,322,935 - ABZR87_RS22080 0.35 -0.5 1,323,166 + ABZR87_RS22080 0.47 -0.1 1,323,213 + ABZR87_RS22080 0.50 -0.6 1,323,214 - ABZR87_RS22080 0.50 -1.7 1,323,261 - ABZR87_RS22080 0.52 -1.8
Or see this region's nucleotide sequence