Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22055 and ABZR87_RS22060 are separated by 38 nucleotides ABZR87_RS22060 and ABZR87_RS22065 are separated by 108 nucleotides ABZR87_RS22065 and ABZR87_RS22070 overlap by 11 nucleotides ABZR87_RS22070 and ABZR87_RS22075 are separated by 35 nucleotides
ABZR87_RS22055: ABZR87_RS22055 - flagellar hook-length control protein FliK, at 1,316,908 to 1,318,500
_RS22055
ABZR87_RS22060: ABZR87_RS22060 - flagellar export protein FliJ, at 1,318,539 to 1,319,003
_RS22060
ABZR87_RS22065: ABZR87_RS22065 - flagellar protein export ATPase FliI, at 1,319,112 to 1,320,548
_RS22065
ABZR87_RS22070: ABZR87_RS22070 - flagellar assembly protein FliH, at 1,320,538 to 1,321,275
_RS22070
ABZR87_RS22075: ABZR87_RS22075 - flagellar motor switch protein FliG, at 1,321,311 to 1,322,303
_RS22075
Position (kb)
1319
1320
1321 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1318.174 kb on - strand, within ABZR87_RS22055 at 1318.219 kb on - strand, within ABZR87_RS22055 at 1318.219 kb on - strand, within ABZR87_RS22055 at 1318.389 kb on + strand at 1318.390 kb on - strand at 1318.434 kb on + strand at 1318.435 kb on - strand at 1318.435 kb on - strand at 1318.789 kb on + strand, within ABZR87_RS22060 at 1318.790 kb on - strand, within ABZR87_RS22060 at 1318.850 kb on - strand, within ABZR87_RS22060 at 1318.904 kb on + strand, within ABZR87_RS22060 at 1318.904 kb on + strand, within ABZR87_RS22060 at 1319.027 kb on + strand at 1319.027 kb on + strand at 1319.027 kb on + strand at 1319.027 kb on + strand at 1319.028 kb on - strand at 1319.061 kb on + strand at 1319.248 kb on + strand at 1319.249 kb on - strand at 1319.293 kb on + strand, within ABZR87_RS22065 at 1319.293 kb on + strand, within ABZR87_RS22065 at 1319.294 kb on - strand, within ABZR87_RS22065 at 1319.294 kb on - strand, within ABZR87_RS22065 at 1319.294 kb on - strand, within ABZR87_RS22065 at 1319.500 kb on + strand, within ABZR87_RS22065 at 1319.599 kb on + strand, within ABZR87_RS22065 at 1319.713 kb on + strand, within ABZR87_RS22065 at 1319.713 kb on + strand, within ABZR87_RS22065 at 1319.713 kb on + strand, within ABZR87_RS22065 at 1319.713 kb on + strand, within ABZR87_RS22065 at 1319.713 kb on + strand, within ABZR87_RS22065 at 1319.714 kb on - strand, within ABZR87_RS22065 at 1319.734 kb on + strand, within ABZR87_RS22065 at 1319.735 kb on - strand, within ABZR87_RS22065 at 1321.232 kb on + strand at 1321.318 kb on + strand at 1321.318 kb on + strand at 1321.318 kb on + strand at 1321.319 kb on - strand at 1321.319 kb on - strand at 1321.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,318,174 - ABZR87_RS22055 0.79 +0.1 1,318,219 - ABZR87_RS22055 0.82 -3.0 1,318,219 - ABZR87_RS22055 0.82 +0.1 1,318,389 + -0.0 1,318,390 - -1.2 1,318,434 + +0.0 1,318,435 - -0.2 1,318,435 - -0.9 1,318,789 + ABZR87_RS22060 0.54 +0.6 1,318,790 - ABZR87_RS22060 0.54 -2.5 1,318,850 - ABZR87_RS22060 0.67 -1.4 1,318,904 + ABZR87_RS22060 0.78 -2.0 1,318,904 + ABZR87_RS22060 0.78 +0.1 1,319,027 + +0.1 1,319,027 + +1.8 1,319,027 + -0.3 1,319,027 + +0.5 1,319,028 - +0.2 1,319,061 + -0.3 1,319,248 + -0.9 1,319,249 - -0.9 1,319,293 + ABZR87_RS22065 0.13 -0.2 1,319,293 + ABZR87_RS22065 0.13 -1.3 1,319,294 - ABZR87_RS22065 0.13 -2.3 1,319,294 - ABZR87_RS22065 0.13 -1.7 1,319,294 - ABZR87_RS22065 0.13 -1.5 1,319,500 + ABZR87_RS22065 0.27 -1.1 1,319,599 + ABZR87_RS22065 0.34 -1.9 1,319,713 + ABZR87_RS22065 0.42 -0.4 1,319,713 + ABZR87_RS22065 0.42 +1.8 1,319,713 + ABZR87_RS22065 0.42 -0.4 1,319,713 + ABZR87_RS22065 0.42 -0.7 1,319,713 + ABZR87_RS22065 0.42 -1.1 1,319,714 - ABZR87_RS22065 0.42 -0.1 1,319,734 + ABZR87_RS22065 0.43 -1.1 1,319,735 - ABZR87_RS22065 0.43 -0.1 1,321,232 + -1.5 1,321,318 + -0.5 1,321,318 + -1.1 1,321,318 + +0.1 1,321,319 - -1.3 1,321,319 - -1.5 1,321,352 - -1.0
Or see this region's nucleotide sequence