Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22055

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22050 and ABZR87_RS22055 are separated by 380 nucleotidesABZR87_RS22055 and ABZR87_RS22060 are separated by 38 nucleotidesABZR87_RS22060 and ABZR87_RS22065 are separated by 108 nucleotides ABZR87_RS22050: ABZR87_RS22050 - DedA family protein/thiosulfate sulfurtransferase GlpE, at 1,315,550 to 1,316,527 _RS22050 ABZR87_RS22055: ABZR87_RS22055 - flagellar hook-length control protein FliK, at 1,316,908 to 1,318,500 _RS22055 ABZR87_RS22060: ABZR87_RS22060 - flagellar export protein FliJ, at 1,318,539 to 1,319,003 _RS22060 ABZR87_RS22065: ABZR87_RS22065 - flagellar protein export ATPase FliI, at 1,319,112 to 1,320,548 _RS22065 Position (kb) 1316 1317 1318 1319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1315.961 kb on + strand, within ABZR87_RS22050at 1315.962 kb on - strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.103 kb on + strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.104 kb on - strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.105 kb on + strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.106 kb on - strand, within ABZR87_RS22050at 1316.109 kb on + strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.110 kb on - strand, within ABZR87_RS22050at 1316.250 kb on + strand, within ABZR87_RS22050at 1316.250 kb on + strand, within ABZR87_RS22050at 1316.251 kb on - strand, within ABZR87_RS22050at 1316.251 kb on - strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.282 kb on + strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.283 kb on - strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.345 kb on + strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.346 kb on - strand, within ABZR87_RS22050at 1316.463 kb on - strandat 1316.463 kb on - strandat 1316.481 kb on + strandat 1316.482 kb on - strandat 1316.605 kb on + strandat 1316.605 kb on + strandat 1316.606 kb on - strandat 1316.606 kb on - strandat 1316.609 kb on + strandat 1316.609 kb on + strandat 1316.609 kb on + strandat 1316.744 kb on + strandat 1316.745 kb on - strandat 1316.774 kb on + strandat 1316.774 kb on + strandat 1316.774 kb on + strandat 1316.775 kb on - strandat 1316.798 kb on - strandat 1316.798 kb on - strandat 1316.798 kb on - strandat 1316.856 kb on + strandat 1316.856 kb on + strandat 1316.857 kb on - strandat 1316.859 kb on + strandat 1316.883 kb on + strandat 1316.883 kb on + strandat 1317.522 kb on + strand, within ABZR87_RS22055at 1317.993 kb on + strand, within ABZR87_RS22055at 1318.174 kb on - strand, within ABZR87_RS22055at 1318.219 kb on - strand, within ABZR87_RS22055at 1318.219 kb on - strand, within ABZR87_RS22055at 1318.389 kb on + strandat 1318.390 kb on - strandat 1318.434 kb on + strandat 1318.435 kb on - strandat 1318.435 kb on - strandat 1318.789 kb on + strand, within ABZR87_RS22060at 1318.790 kb on - strand, within ABZR87_RS22060at 1318.850 kb on - strand, within ABZR87_RS22060at 1318.904 kb on + strand, within ABZR87_RS22060at 1318.904 kb on + strand, within ABZR87_RS22060at 1319.027 kb on + strandat 1319.027 kb on + strandat 1319.027 kb on + strandat 1319.027 kb on + strandat 1319.028 kb on - strandat 1319.061 kb on + strandat 1319.248 kb on + strandat 1319.249 kb on - strandat 1319.293 kb on + strand, within ABZR87_RS22065at 1319.293 kb on + strand, within ABZR87_RS22065at 1319.294 kb on - strand, within ABZR87_RS22065at 1319.294 kb on - strand, within ABZR87_RS22065at 1319.294 kb on - strand, within ABZR87_RS22065at 1319.500 kb on + strand, within ABZR87_RS22065

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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1,315,961 + ABZR87_RS22050 0.42 -0.1
1,315,962 - ABZR87_RS22050 0.42 -0.6
1,316,103 + ABZR87_RS22050 0.57 -0.1
1,316,103 + ABZR87_RS22050 0.57 -0.3
1,316,103 + ABZR87_RS22050 0.57 -0.2
1,316,103 + ABZR87_RS22050 0.57 +0.1
1,316,104 - ABZR87_RS22050 0.57 -0.0
1,316,104 - ABZR87_RS22050 0.57 +0.8
1,316,104 - ABZR87_RS22050 0.57 -0.0
1,316,104 - ABZR87_RS22050 0.57 -0.2
1,316,104 - ABZR87_RS22050 0.57 -0.8
1,316,104 - ABZR87_RS22050 0.57 +0.2
1,316,105 + ABZR87_RS22050 0.57 -0.6
1,316,105 + ABZR87_RS22050 0.57 +0.2
1,316,105 + ABZR87_RS22050 0.57 +0.1
1,316,105 + ABZR87_RS22050 0.57 -0.2
1,316,105 + ABZR87_RS22050 0.57 +0.2
1,316,105 + ABZR87_RS22050 0.57 -0.5
1,316,105 + ABZR87_RS22050 0.57 -1.1
1,316,105 + ABZR87_RS22050 0.57 +0.3
1,316,105 + ABZR87_RS22050 0.57 +0.2
1,316,105 + ABZR87_RS22050 0.57 -1.6
1,316,106 - ABZR87_RS22050 0.57 -0.5
1,316,106 - ABZR87_RS22050 0.57 -0.3
1,316,106 - ABZR87_RS22050 0.57 +0.3
1,316,106 - ABZR87_RS22050 0.57 +0.0
1,316,106 - ABZR87_RS22050 0.57 -0.7
1,316,106 - ABZR87_RS22050 0.57 -0.2
1,316,106 - ABZR87_RS22050 0.57 +0.8
1,316,106 - ABZR87_RS22050 0.57 -0.5
1,316,106 - ABZR87_RS22050 0.57 -0.5
1,316,109 + ABZR87_RS22050 0.57 -0.2
1,316,110 - ABZR87_RS22050 0.57 -0.7
1,316,110 - ABZR87_RS22050 0.57 -0.5
1,316,110 - ABZR87_RS22050 0.57 +0.6
1,316,250 + ABZR87_RS22050 0.72 -0.6
1,316,250 + ABZR87_RS22050 0.72 -0.4
1,316,251 - ABZR87_RS22050 0.72 -1.1
1,316,251 - ABZR87_RS22050 0.72 -0.0
1,316,282 + ABZR87_RS22050 0.75 +0.4
1,316,282 + ABZR87_RS22050 0.75 +0.2
1,316,282 + ABZR87_RS22050 0.75 +0.3
1,316,282 + ABZR87_RS22050 0.75 -2.3
1,316,282 + ABZR87_RS22050 0.75 +0.1
1,316,283 - ABZR87_RS22050 0.75 +0.5
1,316,283 - ABZR87_RS22050 0.75 -0.1
1,316,283 - ABZR87_RS22050 0.75 +0.6
1,316,283 - ABZR87_RS22050 0.75 +0.6
1,316,283 - ABZR87_RS22050 0.75 -0.2
1,316,345 + ABZR87_RS22050 0.81 +0.7
1,316,345 + ABZR87_RS22050 0.81 -1.6
1,316,345 + ABZR87_RS22050 0.81 +0.2
1,316,345 + ABZR87_RS22050 0.81 -0.1
1,316,345 + ABZR87_RS22050 0.81 -1.2
1,316,346 - ABZR87_RS22050 0.81 -0.1
1,316,346 - ABZR87_RS22050 0.81 -0.5
1,316,346 - ABZR87_RS22050 0.81 +1.1
1,316,463 - +0.3
1,316,463 - +0.5
1,316,481 + +0.6
1,316,482 - +0.3
1,316,605 + +1.5
1,316,605 + +0.7
1,316,606 - +0.0
1,316,606 - +1.2
1,316,609 + -0.1
1,316,609 + +1.8
1,316,609 + +1.0
1,316,744 + +0.9
1,316,745 - -1.5
1,316,774 + +0.5
1,316,774 + +1.8
1,316,774 + -0.1
1,316,775 - +0.6
1,316,798 - -0.2
1,316,798 - +0.5
1,316,798 - +0.2
1,316,856 + -1.0
1,316,856 + -0.6
1,316,857 - -1.4
1,316,859 + +1.2
1,316,883 + -1.3
1,316,883 + -0.8
1,317,522 + ABZR87_RS22055 0.39 -1.2
1,317,993 + ABZR87_RS22055 0.68 -0.5
1,318,174 - ABZR87_RS22055 0.79 +0.1
1,318,219 - ABZR87_RS22055 0.82 -3.0
1,318,219 - ABZR87_RS22055 0.82 +0.1
1,318,389 + -0.0
1,318,390 - -1.2
1,318,434 + +0.0
1,318,435 - -0.2
1,318,435 - -0.9
1,318,789 + ABZR87_RS22060 0.54 +0.6
1,318,790 - ABZR87_RS22060 0.54 -2.5
1,318,850 - ABZR87_RS22060 0.67 -1.4
1,318,904 + ABZR87_RS22060 0.78 -2.0
1,318,904 + ABZR87_RS22060 0.78 +0.1
1,319,027 + +0.1
1,319,027 + +1.8
1,319,027 + -0.3
1,319,027 + +0.5
1,319,028 - +0.2
1,319,061 + -0.3
1,319,248 + -0.9
1,319,249 - -0.9
1,319,293 + ABZR87_RS22065 0.13 -0.2
1,319,293 + ABZR87_RS22065 0.13 -1.3
1,319,294 - ABZR87_RS22065 0.13 -2.3
1,319,294 - ABZR87_RS22065 0.13 -1.7
1,319,294 - ABZR87_RS22065 0.13 -1.5
1,319,500 + ABZR87_RS22065 0.27 -1.1

Or see this region's nucleotide sequence