Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21470

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21465 and ABZR87_RS21470 are separated by 107 nucleotidesABZR87_RS21470 and ABZR87_RS21475 overlap by 4 nucleotides ABZR87_RS21465: ABZR87_RS21465 - M1 family metallopeptidase, at 1,195,962 to 1,198,202 _RS21465 ABZR87_RS21470: ABZR87_RS21470 - P-II family nitrogen regulator, at 1,198,310 to 1,198,633 _RS21470 ABZR87_RS21475: ABZR87_RS21475 - efflux RND transporter permease subunit, at 1,198,630 to 1,201,779 _RS21475 Position (kb) 1198 1199Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1197.328 kb on - strand, within ABZR87_RS21465at 1197.328 kb on - strand, within ABZR87_RS21465at 1197.438 kb on + strand, within ABZR87_RS21465at 1197.439 kb on - strand, within ABZR87_RS21465at 1197.439 kb on - strand, within ABZR87_RS21465at 1197.477 kb on + strand, within ABZR87_RS21465at 1197.478 kb on - strand, within ABZR87_RS21465at 1197.478 kb on - strand, within ABZR87_RS21465at 1197.478 kb on - strand, within ABZR87_RS21465at 1197.516 kb on + strand, within ABZR87_RS21465at 1197.528 kb on + strand, within ABZR87_RS21465at 1197.529 kb on - strand, within ABZR87_RS21465at 1197.727 kb on - strand, within ABZR87_RS21465at 1197.765 kb on + strand, within ABZR87_RS21465at 1197.873 kb on + strand, within ABZR87_RS21465at 1197.874 kb on - strand, within ABZR87_RS21465at 1197.874 kb on - strand, within ABZR87_RS21465at 1197.876 kb on + strand, within ABZR87_RS21465at 1197.876 kb on + strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.877 kb on - strand, within ABZR87_RS21465at 1197.888 kb on + strand, within ABZR87_RS21465at 1197.889 kb on - strand, within ABZR87_RS21465at 1197.889 kb on - strand, within ABZR87_RS21465at 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.984 kb on + strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.985 kb on - strandat 1197.987 kb on - strandat 1198.201 kb on - strandat 1198.525 kb on - strand, within ABZR87_RS21470at 1198.525 kb on - strand, within ABZR87_RS21470at 1198.614 kb on - strandat 1198.661 kb on + strandat 1198.661 kb on + strandat 1198.661 kb on + strandat 1198.933 kb on + strandat 1198.933 kb on + strandat 1198.934 kb on - strandat 1198.934 kb on - strandat 1198.971 kb on - strand, within ABZR87_RS21475at 1198.971 kb on - strand, within ABZR87_RS21475at 1199.168 kb on + strand, within ABZR87_RS21475at 1199.168 kb on + strand, within ABZR87_RS21475at 1199.169 kb on - strand, within ABZR87_RS21475at 1199.171 kb on + strand, within ABZR87_RS21475at 1199.172 kb on - strand, within ABZR87_RS21475

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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1,197,328 - ABZR87_RS21465 0.61 +0.2
1,197,328 - ABZR87_RS21465 0.61 -0.9
1,197,438 + ABZR87_RS21465 0.66 -0.5
1,197,439 - ABZR87_RS21465 0.66 -1.1
1,197,439 - ABZR87_RS21465 0.66 +0.4
1,197,477 + ABZR87_RS21465 0.68 -0.1
1,197,478 - ABZR87_RS21465 0.68 +0.7
1,197,478 - ABZR87_RS21465 0.68 +0.8
1,197,478 - ABZR87_RS21465 0.68 -0.1
1,197,516 + ABZR87_RS21465 0.69 -0.2
1,197,528 + ABZR87_RS21465 0.70 +0.5
1,197,529 - ABZR87_RS21465 0.70 -1.1
1,197,727 - ABZR87_RS21465 0.79 -1.4
1,197,765 + ABZR87_RS21465 0.80 +0.2
1,197,873 + ABZR87_RS21465 0.85 +0.4
1,197,874 - ABZR87_RS21465 0.85 -0.5
1,197,874 - ABZR87_RS21465 0.85 -1.0
1,197,876 + ABZR87_RS21465 0.85 +1.1
1,197,876 + ABZR87_RS21465 0.85 -0.2
1,197,877 - ABZR87_RS21465 0.85 +0.0
1,197,877 - ABZR87_RS21465 0.85 -0.8
1,197,877 - ABZR87_RS21465 0.85 -1.4
1,197,888 + ABZR87_RS21465 0.86 -0.8
1,197,889 - ABZR87_RS21465 0.86 +0.2
1,197,889 - ABZR87_RS21465 0.86 -0.3
1,197,984 + +3.4
1,197,984 + +1.2
1,197,984 + +0.1
1,197,984 + -0.5
1,197,985 - +0.4
1,197,985 - -0.3
1,197,985 - -0.4
1,197,985 - +0.2
1,197,987 - +0.4
1,198,201 - -0.6
1,198,525 - ABZR87_RS21470 0.66 +0.9
1,198,525 - ABZR87_RS21470 0.66 +0.3
1,198,614 - +1.8
1,198,661 + +0.8
1,198,661 + -0.7
1,198,661 + +1.2
1,198,933 + +1.1
1,198,933 + +0.1
1,198,934 - -0.5
1,198,934 - +1.1
1,198,971 - ABZR87_RS21475 0.11 -0.2
1,198,971 - ABZR87_RS21475 0.11 +0.0
1,199,168 + ABZR87_RS21475 0.17 +0.8
1,199,168 + ABZR87_RS21475 0.17 -0.6
1,199,169 - ABZR87_RS21475 0.17 +0.7
1,199,171 + ABZR87_RS21475 0.17 -1.9
1,199,172 - ABZR87_RS21475 0.17 +1.6

Or see this region's nucleotide sequence