Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21165 and ABZR87_RS21170 are separated by 11 nucleotides ABZR87_RS21170 and ABZR87_RS21175 are separated by 30 nucleotides
ABZR87_RS21165: ABZR87_RS21165 - acyl-CoA dehydrogenase family protein, at 1,132,604 to 1,133,860
_RS21165
ABZR87_RS21170: ABZR87_RS21170 - ABC transporter ATP-binding protein, at 1,133,872 to 1,134,648
_RS21170
ABZR87_RS21175: ABZR87_RS21175 - acyl-CoA dehydrogenase family protein, at 1,134,679 to 1,135,881
_RS21175
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-1
0
1
2 at 1133.069 kb on + strand, within ABZR87_RS21165 at 1133.069 kb on + strand, within ABZR87_RS21165 at 1133.069 kb on + strand, within ABZR87_RS21165 at 1133.069 kb on + strand, within ABZR87_RS21165 at 1133.070 kb on - strand, within ABZR87_RS21165 at 1133.072 kb on + strand, within ABZR87_RS21165 at 1133.072 kb on + strand, within ABZR87_RS21165 at 1133.073 kb on - strand, within ABZR87_RS21165 at 1133.234 kb on + strand, within ABZR87_RS21165 at 1133.235 kb on - strand, within ABZR87_RS21165 at 1133.291 kb on + strand, within ABZR87_RS21165 at 1133.292 kb on - strand, within ABZR87_RS21165 at 1133.306 kb on + strand, within ABZR87_RS21165 at 1133.306 kb on + strand, within ABZR87_RS21165 at 1133.525 kb on + strand, within ABZR87_RS21165 at 1133.525 kb on + strand, within ABZR87_RS21165 at 1133.671 kb on + strand, within ABZR87_RS21165 at 1133.795 kb on + strand at 1133.795 kb on + strand at 1133.921 kb on - strand at 1134.511 kb on + strand, within ABZR87_RS21170 at 1134.512 kb on - strand, within ABZR87_RS21170 at 1134.512 kb on - strand, within ABZR87_RS21170 at 1134.603 kb on - strand at 1134.868 kb on + strand, within ABZR87_RS21175 at 1134.868 kb on + strand, within ABZR87_RS21175 at 1134.933 kb on + strand, within ABZR87_RS21175 at 1134.934 kb on - strand, within ABZR87_RS21175 at 1135.111 kb on + strand, within ABZR87_RS21175 at 1135.111 kb on + strand, within ABZR87_RS21175 at 1135.298 kb on + strand, within ABZR87_RS21175 at 1135.299 kb on - strand, within ABZR87_RS21175 at 1135.453 kb on + strand, within ABZR87_RS21175 at 1135.517 kb on - strand, within ABZR87_RS21175
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,133,069 + ABZR87_RS21165 0.37 -0.2 1,133,069 + ABZR87_RS21165 0.37 -0.8 1,133,069 + ABZR87_RS21165 0.37 +1.8 1,133,069 + ABZR87_RS21165 0.37 -0.3 1,133,070 - ABZR87_RS21165 0.37 +0.2 1,133,072 + ABZR87_RS21165 0.37 -0.4 1,133,072 + ABZR87_RS21165 0.37 -0.2 1,133,073 - ABZR87_RS21165 0.37 -0.2 1,133,234 + ABZR87_RS21165 0.50 -0.2 1,133,235 - ABZR87_RS21165 0.50 +1.4 1,133,291 + ABZR87_RS21165 0.55 -1.0 1,133,292 - ABZR87_RS21165 0.55 -0.9 1,133,306 + ABZR87_RS21165 0.56 +0.2 1,133,306 + ABZR87_RS21165 0.56 +0.3 1,133,525 + ABZR87_RS21165 0.73 -0.1 1,133,525 + ABZR87_RS21165 0.73 -0.2 1,133,671 + ABZR87_RS21165 0.85 -0.1 1,133,795 + -0.4 1,133,795 + +1.2 1,133,921 - -0.0 1,134,511 + ABZR87_RS21170 0.82 -1.6 1,134,512 - ABZR87_RS21170 0.82 -1.0 1,134,512 - ABZR87_RS21170 0.82 -0.4 1,134,603 - +0.0 1,134,868 + ABZR87_RS21175 0.16 -0.7 1,134,868 + ABZR87_RS21175 0.16 -0.3 1,134,933 + ABZR87_RS21175 0.21 -0.7 1,134,934 - ABZR87_RS21175 0.21 -1.2 1,135,111 + ABZR87_RS21175 0.36 +0.3 1,135,111 + ABZR87_RS21175 0.36 -1.6 1,135,298 + ABZR87_RS21175 0.51 +1.1 1,135,299 - ABZR87_RS21175 0.52 +0.4 1,135,453 + ABZR87_RS21175 0.64 +0.0 1,135,517 - ABZR87_RS21175 0.70 +0.3
Or see this region's nucleotide sequence