Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20490 and ABZR87_RS20495 are separated by 169 nucleotides ABZR87_RS20495 and ABZR87_RS20500 are separated by 278 nucleotides ABZR87_RS20500 and ABZR87_RS20505 are separated by 79 nucleotides ABZR87_RS20505 and ABZR87_RS20510 overlap by 8 nucleotides ABZR87_RS20510 and ABZR87_RS20515 are separated by 199 nucleotides ABZR87_RS20515 and ABZR87_RS20520 are separated by 32 nucleotides
ABZR87_RS20490: ABZR87_RS20490 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 985,742 to 988,327
_RS20490
ABZR87_RS20495: ABZR87_RS20495 - hypothetical protein, at 988,497 to 989,012
_RS20495
ABZR87_RS20500: ABZR87_RS20500 - hypothetical protein, at 989,291 to 989,533
_RS20500
ABZR87_RS20505: ABZR87_RS20505 - hypothetical protein, at 989,613 to 989,813
_RS20505
ABZR87_RS20510: ABZR87_RS20510 - LysR family transcriptional regulator, at 989,806 to 989,880
_RS20510
ABZR87_RS20515: ABZR87_RS20515 - ferredoxin FdxA, at 990,080 to 990,418
_RS20515
ABZR87_RS20520: ABZR87_RS20520 - crotonase/enoyl-CoA hydratase family protein, at 990,451 to 991,272
_RS20520
Position (kb) 989
990 Strain fitness (log2 ratio) -2
-1
0
1
2 at 988.314 kb on + strand at 988.315 kb on - strand at 988.350 kb on + strand at 988.409 kb on + strand at 988.491 kb on + strand at 988.491 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.522 kb on - strand at 988.522 kb on - strand at 988.522 kb on - strand at 988.716 kb on - strand, within ABZR87_RS20495 at 989.051 kb on + strand at 989.051 kb on + strand at 989.051 kb on + strand at 989.052 kb on - strand at 989.052 kb on - strand at 989.101 kb on + strand at 989.101 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.165 kb on + strand at 989.165 kb on + strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.203 kb on + strand at 989.204 kb on - strand at 989.210 kb on + strand at 989.210 kb on + strand at 989.211 kb on - strand at 989.250 kb on - strand at 989.287 kb on - strand at 989.378 kb on + strand, within ABZR87_RS20500 at 989.531 kb on + strand at 989.531 kb on + strand at 989.532 kb on - strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.545 kb on + strand at 989.545 kb on + strand at 989.545 kb on + strand at 989.546 kb on - strand at 989.546 kb on - strand at 989.546 kb on - strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.609 kb on + strand at 989.609 kb on + strand at 989.610 kb on - strand at 989.610 kb on - strand at 989.746 kb on + strand, within ABZR87_RS20505 at 989.747 kb on - strand, within ABZR87_RS20505 at 989.747 kb on - strand, within ABZR87_RS20505 at 989.873 kb on - strand at 989.901 kb on + strand at 989.902 kb on - strand at 989.902 kb on - strand at 989.902 kb on - strand at 989.915 kb on - strand at 989.921 kb on + strand at 989.922 kb on - strand at 989.922 kb on - strand at 989.922 kb on - strand at 989.927 kb on + strand at 989.927 kb on + strand at 989.927 kb on + strand at 989.928 kb on - strand at 989.928 kb on - strand at 989.930 kb on - strand at 990.035 kb on - strand at 990.075 kb on + strand at 990.075 kb on + strand at 990.075 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.087 kb on - strand at 990.087 kb on - strand at 990.087 kb on - strand at 990.090 kb on + strand at 990.090 kb on + strand at 990.090 kb on + strand at 990.091 kb on - strand at 990.091 kb on - strand at 990.091 kb on - strand at 990.091 kb on - strand at 990.119 kb on + strand, within ABZR87_RS20515 at 990.120 kb on - strand, within ABZR87_RS20515 at 990.120 kb on - strand, within ABZR87_RS20515 at 990.245 kb on + strand, within ABZR87_RS20515 at 990.245 kb on + strand, within ABZR87_RS20515
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 988,314 + -0.1 988,315 - +0.7 988,350 + +0.3 988,409 + +0.9 988,491 + -0.4 988,491 + -1.2 988,521 + -0.1 988,521 + +0.8 988,521 + +0.9 988,521 + +0.2 988,522 - -2.1 988,522 - +0.3 988,522 - -0.0 988,716 - ABZR87_RS20495 0.42 -0.9 989,051 + -1.0 989,051 + -1.2 989,051 + -0.1 989,052 - +1.2 989,052 - -0.5 989,101 + +0.4 989,101 + +1.8 989,134 + -0.5 989,134 + +0.9 989,134 + -1.6 989,165 + -0.6 989,165 + +0.3 989,166 - -1.0 989,166 - -0.2 989,166 - -0.4 989,203 + -1.2 989,204 - -0.0 989,210 + +0.1 989,210 + -0.2 989,211 - +0.3 989,250 - +0.4 989,287 - -0.2 989,378 + ABZR87_RS20500 0.36 -0.9 989,531 + +0.0 989,531 + -0.6 989,532 - -0.9 989,541 + -0.2 989,541 + +0.1 989,541 + +0.3 989,541 + +0.7 989,545 + -0.2 989,545 + +0.7 989,545 + -1.3 989,546 - +1.0 989,546 - -0.2 989,546 - -0.4 989,552 + -0.9 989,552 + -0.8 989,552 + +0.4 989,552 + +0.2 989,552 + +2.0 989,609 + +0.7 989,609 + -0.3 989,610 - -0.6 989,610 - -2.0 989,746 + ABZR87_RS20505 0.66 +0.3 989,747 - ABZR87_RS20505 0.67 +0.0 989,747 - ABZR87_RS20505 0.67 -1.2 989,873 - -0.5 989,901 + -0.2 989,902 - -0.0 989,902 - -2.3 989,902 - +2.1 989,915 - +0.7 989,921 + +0.3 989,922 - -0.5 989,922 - +0.4 989,922 - -1.2 989,927 + -0.4 989,927 + -0.3 989,927 + +0.3 989,928 - +1.0 989,928 - -0.9 989,930 - -0.2 990,035 - +0.3 990,075 + -0.4 990,075 + -0.2 990,075 + +0.3 990,079 + -1.7 990,079 + -0.8 990,079 + -0.1 990,079 + -1.7 990,079 + +0.5 990,080 - +0.5 990,080 - -0.1 990,080 - +1.2 990,080 - -0.7 990,080 - -0.0 990,086 + -0.8 990,086 + +0.6 990,086 + -0.4 990,086 + -0.2 990,086 + -0.3 990,086 + -0.2 990,086 + -0.7 990,086 + -0.7 990,086 + +0.4 990,087 - +0.2 990,087 - -0.1 990,087 - -0.0 990,090 + -0.7 990,090 + +1.8 990,090 + -0.5 990,091 - +0.0 990,091 - +1.0 990,091 - -0.8 990,091 - -0.5 990,119 + ABZR87_RS20515 0.12 +1.0 990,120 - ABZR87_RS20515 0.12 -0.3 990,120 - ABZR87_RS20515 0.12 -0.3 990,245 + ABZR87_RS20515 0.49 -0.1 990,245 + ABZR87_RS20515 0.49 -0.2
Or see this region's nucleotide sequence