Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20445 and ABZR87_RS20450 are separated by 45 nucleotides ABZR87_RS20450 and ABZR87_RS20455 are separated by 59 nucleotides
ABZR87_RS20445: ABZR87_RS20445 - LysR substrate-binding domain-containing protein, at 974,725 to 975,660
_RS20445
ABZR87_RS20450: ABZR87_RS20450 - HAD family phosphatase, at 975,706 to 976,389
_RS20450
ABZR87_RS20455: ABZR87_RS20455 - TIGR03364 family FAD-dependent oxidoreductase, at 976,449 to 977,669
_RS20455
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.738 kb on + strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.739 kb on - strand at 974.851 kb on + strand, within ABZR87_RS20445 at 974.851 kb on + strand, within ABZR87_RS20445 at 974.851 kb on + strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 974.852 kb on - strand, within ABZR87_RS20445 at 975.025 kb on + strand, within ABZR87_RS20445 at 975.025 kb on + strand, within ABZR87_RS20445 at 975.025 kb on + strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.026 kb on - strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.028 kb on + strand, within ABZR87_RS20445 at 975.029 kb on - strand, within ABZR87_RS20445 at 975.029 kb on - strand, within ABZR87_RS20445 at 975.259 kb on - strand, within ABZR87_RS20445 at 975.397 kb on + strand, within ABZR87_RS20445 at 975.397 kb on + strand, within ABZR87_RS20445 at 975.511 kb on + strand, within ABZR87_RS20445 at 975.517 kb on + strand, within ABZR87_RS20445 at 975.518 kb on - strand, within ABZR87_RS20445 at 975.518 kb on - strand, within ABZR87_RS20445 at 975.630 kb on + strand at 975.659 kb on - strand at 975.705 kb on + strand at 975.706 kb on - strand at 975.706 kb on - strand at 975.706 kb on - strand at 976.054 kb on + strand, within ABZR87_RS20450 at 976.259 kb on - strand, within ABZR87_RS20450 at 976.526 kb on + strand at 976.527 kb on - strand at 976.527 kb on - strand at 976.527 kb on - strand at 976.912 kb on + strand, within ABZR87_RS20455 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 977.044 kb on + strand, within ABZR87_RS20455 at 977.204 kb on - strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.264 kb on - strand, within ABZR87_RS20455
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 974,738 + +0.8 974,738 + -0.3 974,738 + -0.9 974,738 + +0.0 974,738 + -0.4 974,738 + -0.1 974,738 + +0.0 974,739 - -0.6 974,739 - -0.0 974,739 - -0.5 974,739 - +0.2 974,739 - -0.1 974,739 - -0.7 974,851 + ABZR87_RS20445 0.13 +1.8 974,851 + ABZR87_RS20445 0.13 +0.3 974,851 + ABZR87_RS20445 0.13 +1.8 974,852 - ABZR87_RS20445 0.14 +0.8 974,852 - ABZR87_RS20445 0.14 -0.5 974,852 - ABZR87_RS20445 0.14 -0.0 974,852 - ABZR87_RS20445 0.14 -1.7 974,852 - ABZR87_RS20445 0.14 -0.7 975,025 + ABZR87_RS20445 0.32 +0.3 975,025 + ABZR87_RS20445 0.32 -0.0 975,025 + ABZR87_RS20445 0.32 -1.0 975,026 - ABZR87_RS20445 0.32 +0.2 975,026 - ABZR87_RS20445 0.32 +0.7 975,026 - ABZR87_RS20445 0.32 -0.0 975,026 - ABZR87_RS20445 0.32 -0.7 975,028 + ABZR87_RS20445 0.32 +1.0 975,028 + ABZR87_RS20445 0.32 +1.6 975,028 + ABZR87_RS20445 0.32 -1.1 975,028 + ABZR87_RS20445 0.32 -0.2 975,028 + ABZR87_RS20445 0.32 +0.2 975,028 + ABZR87_RS20445 0.32 -0.7 975,028 + ABZR87_RS20445 0.32 -2.8 975,029 - ABZR87_RS20445 0.32 -1.0 975,029 - ABZR87_RS20445 0.32 -0.7 975,259 - ABZR87_RS20445 0.57 -1.1 975,397 + ABZR87_RS20445 0.72 -0.2 975,397 + ABZR87_RS20445 0.72 +0.2 975,511 + ABZR87_RS20445 0.84 +0.4 975,517 + ABZR87_RS20445 0.85 +0.2 975,518 - ABZR87_RS20445 0.85 -0.6 975,518 - ABZR87_RS20445 0.85 +0.2 975,630 + +0.6 975,659 - -0.7 975,705 + -0.1 975,706 - -0.9 975,706 - -0.1 975,706 - -0.8 976,054 + ABZR87_RS20450 0.51 -0.6 976,259 - ABZR87_RS20450 0.81 -0.8 976,526 + +0.5 976,527 - +0.8 976,527 - -1.2 976,527 - +0.2 976,912 + ABZR87_RS20455 0.38 -0.0 976,912 + ABZR87_RS20455 0.38 -0.9 976,912 + ABZR87_RS20455 0.38 +0.1 976,913 - ABZR87_RS20455 0.38 -0.4 976,913 - ABZR87_RS20455 0.38 +0.1 976,913 - ABZR87_RS20455 0.38 -0.2 976,913 - ABZR87_RS20455 0.38 +0.3 976,913 - ABZR87_RS20455 0.38 +0.5 976,913 - ABZR87_RS20455 0.38 +1.0 977,044 + ABZR87_RS20455 0.49 -0.5 977,204 - ABZR87_RS20455 0.62 +1.8 977,263 + ABZR87_RS20455 0.67 -1.0 977,263 + ABZR87_RS20455 0.67 -0.7 977,263 + ABZR87_RS20455 0.67 -0.2 977,264 - ABZR87_RS20455 0.67 -0.1
Or see this region's nucleotide sequence