Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20085 and ABZR87_RS20090 are separated by 80 nucleotides ABZR87_RS20090 and ABZR87_RS20095 are separated by 448 nucleotides
ABZR87_RS20085: ABZR87_RS20085 - zinc-dependent alcohol dehydrogenase family protein, at 880,291 to 881,301
_RS20085
ABZR87_RS20090: ABZR87_RS20090 - universal stress protein, at 881,382 to 881,837
_RS20090
ABZR87_RS20095: ABZR87_RS20095 - class II glutamine amidotransferase, at 882,286 to 883,179
_RS20095
Position (kb) 881
882 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 880.431 kb on + strand, within ABZR87_RS20085 at 880.431 kb on + strand, within ABZR87_RS20085 at 880.431 kb on + strand, within ABZR87_RS20085 at 880.432 kb on - strand, within ABZR87_RS20085 at 880.639 kb on + strand, within ABZR87_RS20085 at 880.640 kb on - strand, within ABZR87_RS20085 at 880.657 kb on + strand, within ABZR87_RS20085 at 880.657 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.666 kb on + strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.667 kb on - strand, within ABZR87_RS20085 at 880.687 kb on + strand, within ABZR87_RS20085 at 880.688 kb on - strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.804 kb on + strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 880.805 kb on - strand, within ABZR87_RS20085 at 881.160 kb on + strand, within ABZR87_RS20085 at 881.160 kb on + strand, within ABZR87_RS20085 at 881.160 kb on + strand, within ABZR87_RS20085 at 881.333 kb on + strand at 881.333 kb on + strand at 881.333 kb on + strand at 881.334 kb on - strand at 881.334 kb on - strand at 881.342 kb on + strand at 881.343 kb on - strand at 881.356 kb on + strand at 881.356 kb on + strand at 881.357 kb on - strand at 881.385 kb on + strand at 881.385 kb on + strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.386 kb on - strand at 881.427 kb on + strand at 881.427 kb on + strand at 881.427 kb on + strand at 881.548 kb on - strand, within ABZR87_RS20090 at 881.568 kb on + strand, within ABZR87_RS20090 at 881.568 kb on + strand, within ABZR87_RS20090 at 881.568 kb on + strand, within ABZR87_RS20090 at 881.569 kb on - strand, within ABZR87_RS20090 at 881.569 kb on - strand, within ABZR87_RS20090 at 881.569 kb on - strand, within ABZR87_RS20090 at 881.835 kb on + strand at 881.836 kb on - strand at 882.088 kb on - strand at 882.158 kb on - strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.247 kb on + strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.248 kb on - strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.271 kb on + strand at 882.272 kb on - strand at 882.272 kb on - strand at 882.272 kb on - strand at 882.273 kb on + strand at 882.273 kb on + strand at 882.273 kb on + strand at 882.273 kb on + strand at 882.274 kb on - strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.304 kb on + strand at 882.425 kb on + strand, within ABZR87_RS20095 at 882.425 kb on + strand, within ABZR87_RS20095 at 882.426 kb on - strand, within ABZR87_RS20095 at 882.426 kb on - strand, within ABZR87_RS20095 at 882.442 kb on + strand, within ABZR87_RS20095 at 882.643 kb on + strand, within ABZR87_RS20095 at 882.643 kb on + strand, within ABZR87_RS20095 at 882.644 kb on - strand, within ABZR87_RS20095 at 882.832 kb on + strand, within ABZR87_RS20095
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 880,431 + ABZR87_RS20085 0.14 -0.4 880,431 + ABZR87_RS20085 0.14 +0.2 880,431 + ABZR87_RS20085 0.14 -0.4 880,432 - ABZR87_RS20085 0.14 -0.2 880,639 + ABZR87_RS20085 0.34 +4.3 880,640 - ABZR87_RS20085 0.35 +0.3 880,657 + ABZR87_RS20085 0.36 +0.1 880,657 + ABZR87_RS20085 0.36 -0.2 880,666 + ABZR87_RS20085 0.37 +0.2 880,666 + ABZR87_RS20085 0.37 -0.1 880,666 + ABZR87_RS20085 0.37 -0.6 880,666 + ABZR87_RS20085 0.37 -0.3 880,666 + ABZR87_RS20085 0.37 +0.3 880,667 - ABZR87_RS20085 0.37 +0.3 880,667 - ABZR87_RS20085 0.37 -1.6 880,667 - ABZR87_RS20085 0.37 -0.3 880,667 - ABZR87_RS20085 0.37 +0.9 880,667 - ABZR87_RS20085 0.37 +0.5 880,687 + ABZR87_RS20085 0.39 +0.1 880,688 - ABZR87_RS20085 0.39 +1.2 880,804 + ABZR87_RS20085 0.51 -0.5 880,804 + ABZR87_RS20085 0.51 -0.3 880,804 + ABZR87_RS20085 0.51 -0.5 880,804 + ABZR87_RS20085 0.51 +0.1 880,804 + ABZR87_RS20085 0.51 -0.5 880,804 + ABZR87_RS20085 0.51 +0.7 880,805 - ABZR87_RS20085 0.51 +0.6 880,805 - ABZR87_RS20085 0.51 +0.2 880,805 - ABZR87_RS20085 0.51 -1.3 880,805 - ABZR87_RS20085 0.51 +1.5 880,805 - ABZR87_RS20085 0.51 +0.6 880,805 - ABZR87_RS20085 0.51 +0.5 881,160 + ABZR87_RS20085 0.86 +0.2 881,160 + ABZR87_RS20085 0.86 -1.0 881,160 + ABZR87_RS20085 0.86 +0.3 881,333 + -0.6 881,333 + -0.4 881,333 + -0.7 881,334 - +1.2 881,334 - +0.2 881,342 + -0.5 881,343 - -0.8 881,356 + -0.2 881,356 + -1.7 881,357 - -0.1 881,385 + +0.5 881,385 + -0.6 881,386 - -0.1 881,386 - -1.2 881,386 - +0.2 881,386 - -1.0 881,386 - +2.9 881,427 + +0.2 881,427 + -1.3 881,427 + +1.0 881,548 - ABZR87_RS20090 0.36 -0.6 881,568 + ABZR87_RS20090 0.41 -1.0 881,568 + ABZR87_RS20090 0.41 -0.2 881,568 + ABZR87_RS20090 0.41 -1.3 881,569 - ABZR87_RS20090 0.41 +0.2 881,569 - ABZR87_RS20090 0.41 -1.4 881,569 - ABZR87_RS20090 0.41 -0.4 881,835 + +0.5 881,836 - +0.2 882,088 - -1.9 882,158 - +0.1 882,247 + -0.1 882,247 + -0.5 882,247 + +0.1 882,247 + +0.2 882,247 + +0.3 882,247 + +0.4 882,247 + +0.8 882,247 + +2.1 882,248 - +0.4 882,248 - +1.0 882,248 - +0.4 882,248 - +0.3 882,248 - -0.3 882,248 - -0.1 882,271 + -0.1 882,271 + -0.2 882,271 + -0.0 882,271 + +0.3 882,271 + -1.9 882,272 - -1.4 882,272 - -0.1 882,272 - -0.0 882,273 + -0.4 882,273 + -0.6 882,273 + -0.4 882,273 + +0.2 882,274 - -0.1 882,304 + -2.0 882,304 + -0.9 882,304 + +0.8 882,304 + +0.2 882,304 + +1.1 882,425 + ABZR87_RS20095 0.16 -0.4 882,425 + ABZR87_RS20095 0.16 -0.2 882,426 - ABZR87_RS20095 0.16 -0.3 882,426 - ABZR87_RS20095 0.16 +0.2 882,442 + ABZR87_RS20095 0.17 +0.3 882,643 + ABZR87_RS20095 0.40 +0.4 882,643 + ABZR87_RS20095 0.40 -0.4 882,644 - ABZR87_RS20095 0.40 +0.2 882,832 + ABZR87_RS20095 0.61 +2.8
Or see this region's nucleotide sequence