Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19975 and ABZR87_RS19980 are separated by 10 nucleotides ABZR87_RS19980 and ABZR87_RS19985 are separated by 29 nucleotides ABZR87_RS19985 and ABZR87_RS19990 overlap by 4 nucleotides
ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403
_RS19975
ABZR87_RS19980: ABZR87_RS19980 - DUF1488 domain-containing protein, at 861,414 to 861,692
_RS19980
ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663
_RS19985
ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024
_RS19990
Position (kb)
861
862 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 860.977 kb on + strand, within ABZR87_RS19975 at 860.978 kb on - strand, within ABZR87_RS19975 at 860.991 kb on + strand, within ABZR87_RS19975 at 861.054 kb on + strand, within ABZR87_RS19975 at 861.055 kb on - strand, within ABZR87_RS19975 at 861.300 kb on + strand at 861.300 kb on + strand at 861.300 kb on + strand at 861.300 kb on + strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.410 kb on + strand at 861.410 kb on + strand at 861.410 kb on + strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.596 kb on - strand, within ABZR87_RS19980 at 861.656 kb on - strand, within ABZR87_RS19980 at 861.707 kb on - strand at 861.707 kb on - strand at 861.707 kb on - strand at 861.756 kb on - strand at 861.756 kb on - strand at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.874 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.372 kb on - strand, within ABZR87_RS19985 at 862.506 kb on + strand, within ABZR87_RS19985 at 862.506 kb on + strand, within ABZR87_RS19985 at 862.507 kb on - strand, within ABZR87_RS19985 at 862.507 kb on - strand, within ABZR87_RS19985 at 862.518 kb on + strand, within ABZR87_RS19985 at 862.518 kb on + strand, within ABZR87_RS19985 at 862.519 kb on - strand, within ABZR87_RS19985 at 862.519 kb on - strand, within ABZR87_RS19985 at 862.679 kb on + strand at 862.679 kb on + strand at 862.692 kb on - strand at 862.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 860,977 + ABZR87_RS19975 0.72 -0.8 860,978 - ABZR87_RS19975 0.72 -0.3 860,991 + ABZR87_RS19975 0.73 -0.5 861,054 + ABZR87_RS19975 0.77 -0.4 861,055 - ABZR87_RS19975 0.77 -1.6 861,300 + -0.9 861,300 + +0.4 861,300 + +0.1 861,300 + +0.5 861,301 - -0.2 861,301 - +0.9 861,301 - -0.3 861,301 - -0.3 861,301 - -0.0 861,301 - -0.4 861,301 - -0.2 861,301 - +0.6 861,301 - +0.6 861,322 + +0.8 861,322 + +0.5 861,322 + +0.4 861,322 + +0.2 861,322 + +0.7 861,323 - +0.0 861,323 - -1.0 861,323 - +0.4 861,323 - +0.1 861,323 - -0.0 861,323 - +0.5 861,323 - -0.2 861,410 + +2.5 861,410 + +0.1 861,410 + -2.0 861,411 - -0.1 861,411 - +0.5 861,411 - +0.4 861,411 - +0.0 861,411 - +0.8 861,411 - -1.3 861,411 - -0.1 861,596 - ABZR87_RS19980 0.65 -0.4 861,656 - ABZR87_RS19980 0.87 -1.6 861,707 - -0.2 861,707 - -0.8 861,707 - -1.0 861,756 - +0.1 861,756 - -0.3 861,873 + ABZR87_RS19985 0.16 +1.1 861,873 + ABZR87_RS19985 0.16 +0.4 861,873 + ABZR87_RS19985 0.16 -0.2 861,874 - ABZR87_RS19985 0.16 +0.4 861,906 - ABZR87_RS19985 0.20 +0.8 861,906 - ABZR87_RS19985 0.20 -0.7 862,001 + ABZR87_RS19985 0.30 +0.3 862,001 + ABZR87_RS19985 0.30 -0.4 862,001 + ABZR87_RS19985 0.30 -0.4 862,002 - ABZR87_RS19985 0.30 +0.2 862,002 - ABZR87_RS19985 0.30 -0.1 862,002 - ABZR87_RS19985 0.30 -0.0 862,005 + ABZR87_RS19985 0.30 -0.1 862,005 + ABZR87_RS19985 0.30 +0.8 862,005 + ABZR87_RS19985 0.30 -0.6 862,005 + ABZR87_RS19985 0.30 -0.6 862,005 + ABZR87_RS19985 0.30 +0.2 862,006 - ABZR87_RS19985 0.30 +0.5 862,006 - ABZR87_RS19985 0.30 -0.2 862,033 + ABZR87_RS19985 0.33 -0.1 862,033 + ABZR87_RS19985 0.33 -2.7 862,034 - ABZR87_RS19985 0.33 +0.5 862,034 - ABZR87_RS19985 0.33 -0.3 862,160 + ABZR87_RS19985 0.46 -0.4 862,160 + ABZR87_RS19985 0.46 +0.1 862,160 + ABZR87_RS19985 0.46 -1.4 862,160 + ABZR87_RS19985 0.46 +0.5 862,160 + ABZR87_RS19985 0.46 +0.0 862,160 + ABZR87_RS19985 0.46 -0.4 862,160 + ABZR87_RS19985 0.46 +1.0 862,161 - ABZR87_RS19985 0.47 +0.5 862,161 - ABZR87_RS19985 0.47 +1.2 862,224 + ABZR87_RS19985 0.53 +0.5 862,224 + ABZR87_RS19985 0.53 -0.6 862,224 + ABZR87_RS19985 0.53 -0.6 862,360 + ABZR87_RS19985 0.68 +0.3 862,360 + ABZR87_RS19985 0.68 -0.5 862,360 + ABZR87_RS19985 0.68 -1.2 862,360 + ABZR87_RS19985 0.68 +1.8 862,360 + ABZR87_RS19985 0.68 +0.2 862,361 - ABZR87_RS19985 0.68 +0.2 862,361 - ABZR87_RS19985 0.68 -0.3 862,361 - ABZR87_RS19985 0.68 +0.8 862,361 - ABZR87_RS19985 0.68 +0.5 862,361 - ABZR87_RS19985 0.68 -0.0 862,362 + ABZR87_RS19985 0.68 -0.0 862,362 + ABZR87_RS19985 0.68 -0.2 862,362 + ABZR87_RS19985 0.68 -0.9 862,362 + ABZR87_RS19985 0.68 +0.4 862,362 + ABZR87_RS19985 0.68 +0.3 862,362 + ABZR87_RS19985 0.68 -0.2 862,362 + ABZR87_RS19985 0.68 +0.5 862,363 - ABZR87_RS19985 0.68 +0.3 862,363 - ABZR87_RS19985 0.68 +0.1 862,363 - ABZR87_RS19985 0.68 -0.8 862,363 - ABZR87_RS19985 0.68 +0.2 862,363 - ABZR87_RS19985 0.68 -1.2 862,363 - ABZR87_RS19985 0.68 +0.6 862,363 - ABZR87_RS19985 0.68 +0.4 862,372 - ABZR87_RS19985 0.69 +0.2 862,506 + ABZR87_RS19985 0.83 -0.9 862,506 + ABZR87_RS19985 0.83 -0.5 862,507 - ABZR87_RS19985 0.83 +1.1 862,507 - ABZR87_RS19985 0.83 -0.7 862,518 + ABZR87_RS19985 0.85 -0.3 862,518 + ABZR87_RS19985 0.85 -0.7 862,519 - ABZR87_RS19985 0.85 +0.3 862,519 - ABZR87_RS19985 0.85 -0.3 862,679 + -0.5 862,679 + -1.6 862,692 - +0.0 862,692 - -2.0
Or see this region's nucleotide sequence