Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19750 and ABZR87_RS19755 overlap by 14 nucleotides ABZR87_RS19755 and ABZR87_RS19760 are separated by 22 nucleotides ABZR87_RS19760 and ABZR87_RS19765 are separated by 242 nucleotides ABZR87_RS19765 and ABZR87_RS19770 are separated by 122 nucleotides
ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878
_RS19750
ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734
_RS19755
ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023
_RS19760
ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796
_RS19765
ABZR87_RS19770: ABZR87_RS19770 - H-NS family nucleoid-associated regulatory protein, at 808,919 to 809,188
_RS19770
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1 at 806.794 kb on - strand, within ABZR87_RS19750 at 807.028 kb on + strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.029 kb on - strand, within ABZR87_RS19755 at 807.062 kb on + strand, within ABZR87_RS19755 at 807.187 kb on + strand, within ABZR87_RS19755 at 807.301 kb on + strand, within ABZR87_RS19755 at 807.394 kb on + strand, within ABZR87_RS19755 at 807.395 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.617 kb on - strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.622 kb on + strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.623 kb on - strand, within ABZR87_RS19755 at 807.758 kb on + strand at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.815 kb on + strand, within ABZR87_RS19760 at 807.816 kb on - strand, within ABZR87_RS19760 at 807.816 kb on - strand, within ABZR87_RS19760 at 807.926 kb on + strand, within ABZR87_RS19760 at 807.987 kb on + strand, within ABZR87_RS19760 at 808.085 kb on + strand at 808.085 kb on + strand at 808.086 kb on - strand at 808.776 kb on + strand at 808.776 kb on + strand at 808.776 kb on + strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.777 kb on - strand at 808.875 kb on + strand at 808.876 kb on - strand at 808.901 kb on - strand at 808.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 806,794 - ABZR87_RS19750 0.89 -0.1 807,028 + ABZR87_RS19755 0.19 +0.2 807,029 - ABZR87_RS19755 0.19 -1.7 807,029 - ABZR87_RS19755 0.19 +0.2 807,029 - ABZR87_RS19755 0.19 -0.3 807,029 - ABZR87_RS19755 0.19 +0.2 807,062 + ABZR87_RS19755 0.23 +0.4 807,187 + ABZR87_RS19755 0.37 +1.4 807,301 + ABZR87_RS19755 0.50 +0.5 807,394 + ABZR87_RS19755 0.61 -0.3 807,395 - ABZR87_RS19755 0.61 +0.6 807,617 - ABZR87_RS19755 0.86 +0.4 807,617 - ABZR87_RS19755 0.86 +0.3 807,617 - ABZR87_RS19755 0.86 -0.1 807,617 - ABZR87_RS19755 0.86 -0.2 807,622 + ABZR87_RS19755 0.87 -1.2 807,622 + ABZR87_RS19755 0.87 -0.4 807,622 + ABZR87_RS19755 0.87 -0.1 807,622 + ABZR87_RS19755 0.87 +0.9 807,622 + ABZR87_RS19755 0.87 -1.7 807,622 + ABZR87_RS19755 0.87 -0.6 807,623 - ABZR87_RS19755 0.87 -0.6 807,623 - ABZR87_RS19755 0.87 +0.2 807,623 - ABZR87_RS19755 0.87 -1.9 807,623 - ABZR87_RS19755 0.87 -0.9 807,623 - ABZR87_RS19755 0.87 +1.6 807,623 - ABZR87_RS19755 0.87 -0.5 807,623 - ABZR87_RS19755 0.87 +0.5 807,623 - ABZR87_RS19755 0.87 +0.3 807,758 + -0.2 807,815 + ABZR87_RS19760 0.22 -0.2 807,815 + ABZR87_RS19760 0.22 -0.9 807,815 + ABZR87_RS19760 0.22 -1.5 807,815 + ABZR87_RS19760 0.22 -0.6 807,816 - ABZR87_RS19760 0.22 -0.9 807,816 - ABZR87_RS19760 0.22 -1.7 807,926 + ABZR87_RS19760 0.63 +0.0 807,987 + ABZR87_RS19760 0.86 -0.5 808,085 + -0.4 808,085 + +0.5 808,086 - -1.0 808,776 + +0.5 808,776 + -0.5 808,776 + -0.9 808,777 - +0.4 808,777 - +0.6 808,777 - -0.9 808,777 - -0.2 808,777 - -0.2 808,875 + +0.5 808,876 - -0.7 808,901 - +0.6 808,901 - -0.4
Or see this region's nucleotide sequence