Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19480 and ABZR87_RS19485 are separated by 119 nucleotides ABZR87_RS19485 and ABZR87_RS19490 are separated by 414 nucleotides ABZR87_RS19490 and ABZR87_RS19495 are separated by 304 nucleotides
ABZR87_RS19480: ABZR87_RS19480 - methyl-accepting chemotaxis protein, at 740,390 to 741,931
_RS19480
ABZR87_RS19485: ABZR87_RS19485 - H-NS histone family protein, at 742,051 to 742,359
_RS19485
ABZR87_RS19490: ABZR87_RS19490 - bifunctional diguanylate cyclase/phosphodiesterase, at 742,774 to 744,861
_RS19490
ABZR87_RS19495: ABZR87_RS19495 - helix-turn-helix transcriptional regulator, at 745,166 to 746,272
_RS19495
Position (kb) 742
743
744
745 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 741.929 kb on + strand at 741.930 kb on - strand at 741.955 kb on + strand at 741.956 kb on - strand at 741.956 kb on - strand at 741.958 kb on + strand at 741.959 kb on - strand at 741.959 kb on - strand at 741.959 kb on - strand at 742.137 kb on + strand, within ABZR87_RS19485 at 742.138 kb on - strand, within ABZR87_RS19485 at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.420 kb on + strand at 742.421 kb on - strand at 742.544 kb on + strand at 742.545 kb on - strand at 742.550 kb on + strand at 742.550 kb on + strand at 742.551 kb on - strand at 742.551 kb on - strand at 742.557 kb on + strand at 742.557 kb on + strand at 742.557 kb on + strand at 742.558 kb on - strand at 742.558 kb on - strand at 742.560 kb on + strand at 742.560 kb on + strand at 742.561 kb on - strand at 742.631 kb on - strand at 742.638 kb on + strand at 742.638 kb on + strand at 742.639 kb on - strand at 742.639 kb on - strand at 742.646 kb on + strand at 742.690 kb on - strand at 742.690 kb on - strand at 742.771 kb on + strand at 742.771 kb on + strand at 742.772 kb on - strand at 742.781 kb on + strand at 742.781 kb on + strand at 742.782 kb on - strand at 742.796 kb on - strand at 742.838 kb on + strand at 742.838 kb on + strand at 742.839 kb on - strand at 742.839 kb on - strand at 743.045 kb on + strand, within ABZR87_RS19490 at 743.164 kb on - strand, within ABZR87_RS19490 at 743.198 kb on + strand, within ABZR87_RS19490 at 743.199 kb on - strand, within ABZR87_RS19490 at 743.474 kb on + strand, within ABZR87_RS19490 at 743.474 kb on + strand, within ABZR87_RS19490 at 743.474 kb on + strand, within ABZR87_RS19490 at 743.475 kb on - strand, within ABZR87_RS19490 at 743.475 kb on - strand, within ABZR87_RS19490 at 743.475 kb on - strand, within ABZR87_RS19490 at 743.486 kb on + strand, within ABZR87_RS19490 at 743.486 kb on + strand, within ABZR87_RS19490 at 743.486 kb on + strand, within ABZR87_RS19490 at 743.487 kb on - strand, within ABZR87_RS19490 at 743.487 kb on - strand, within ABZR87_RS19490 at 743.490 kb on - strand, within ABZR87_RS19490 at 743.490 kb on - strand, within ABZR87_RS19490 at 743.490 kb on - strand, within ABZR87_RS19490 at 743.490 kb on - strand, within ABZR87_RS19490 at 743.490 kb on - strand, within ABZR87_RS19490 at 743.588 kb on + strand, within ABZR87_RS19490 at 743.589 kb on - strand, within ABZR87_RS19490 at 743.916 kb on - strand, within ABZR87_RS19490 at 743.916 kb on - strand, within ABZR87_RS19490 at 743.954 kb on + strand, within ABZR87_RS19490 at 743.954 kb on + strand, within ABZR87_RS19490 at 743.954 kb on + strand, within ABZR87_RS19490 at 743.954 kb on + strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 743.955 kb on - strand, within ABZR87_RS19490 at 744.262 kb on + strand, within ABZR87_RS19490 at 744.262 kb on + strand, within ABZR87_RS19490 at 744.262 kb on + strand, within ABZR87_RS19490 at 744.262 kb on + strand, within ABZR87_RS19490 at 744.262 kb on + strand, within ABZR87_RS19490 at 744.262 kb on + strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.263 kb on - strand, within ABZR87_RS19490 at 744.348 kb on + strand, within ABZR87_RS19490 at 744.348 kb on + strand, within ABZR87_RS19490 at 744.349 kb on - strand, within ABZR87_RS19490 at 744.349 kb on - strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.376 kb on + strand, within ABZR87_RS19490 at 744.377 kb on - strand, within ABZR87_RS19490 at 744.377 kb on - strand, within ABZR87_RS19490 at 744.377 kb on - strand, within ABZR87_RS19490 at 744.377 kb on - strand, within ABZR87_RS19490 at 744.377 kb on - strand, within ABZR87_RS19490 at 744.377 kb on - strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.470 kb on + strand, within ABZR87_RS19490 at 744.471 kb on - strand, within ABZR87_RS19490 at 744.471 kb on - strand, within ABZR87_RS19490 at 744.471 kb on - strand, within ABZR87_RS19490 at 744.843 kb on + strand at 744.856 kb on - strand at 744.856 kb on - strand at 744.891 kb on + strand at 744.892 kb on - strand at 744.892 kb on - strand at 744.904 kb on + strand at 744.904 kb on + strand at 744.904 kb on + strand at 744.904 kb on + strand at 744.904 kb on + strand at 744.905 kb on - strand at 744.905 kb on - strand at 744.905 kb on - strand at 744.927 kb on + strand at 744.979 kb on + strand at 744.980 kb on - strand at 744.980 kb on - strand at 745.053 kb on + strand at 745.093 kb on + strand at 745.093 kb on + strand at 745.306 kb on + strand, within ABZR87_RS19495 at 745.306 kb on + strand, within ABZR87_RS19495 at 745.307 kb on - strand, within ABZR87_RS19495 at 745.431 kb on - strand, within ABZR87_RS19495 at 745.431 kb on - strand, within ABZR87_RS19495 at 745.572 kb on + strand, within ABZR87_RS19495 at 745.572 kb on + strand, within ABZR87_RS19495 at 745.572 kb on + strand, within ABZR87_RS19495 at 745.572 kb on + strand, within ABZR87_RS19495 at 745.572 kb on + strand, within ABZR87_RS19495 at 745.573 kb on - strand, within ABZR87_RS19495 at 745.573 kb on - strand, within ABZR87_RS19495 at 745.573 kb on - strand, within ABZR87_RS19495 at 745.573 kb on - strand, within ABZR87_RS19495 at 745.769 kb on + strand, within ABZR87_RS19495 at 745.769 kb on + strand, within ABZR87_RS19495 at 745.770 kb on - strand, within ABZR87_RS19495 at 745.787 kb on - strand, within ABZR87_RS19495
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 741,929 + -1.6 741,930 - -1.4 741,955 + +0.3 741,956 - -0.1 741,956 - -0.1 741,958 + +0.3 741,959 - -0.4 741,959 - +0.1 741,959 - -0.2 742,137 + ABZR87_RS19485 0.28 +0.9 742,138 - ABZR87_RS19485 0.28 -0.2 742,349 + +0.3 742,349 + +0.2 742,349 + +0.2 742,349 + -0.6 742,349 + -0.2 742,349 + +0.2 742,418 + +1.1 742,418 + -0.1 742,418 + +0.4 742,418 + +0.5 742,419 - -1.3 742,419 - -0.8 742,419 - -1.7 742,419 - -0.3 742,419 - -0.4 742,420 + +0.3 742,421 - -2.0 742,544 + +0.3 742,545 - -1.3 742,550 + +1.0 742,550 + +0.8 742,551 - -0.7 742,551 - -0.1 742,557 + -0.1 742,557 + +0.3 742,557 + +1.8 742,558 - -0.1 742,558 - +0.6 742,560 + +3.0 742,560 + +0.8 742,561 - -0.4 742,631 - -0.5 742,638 + +0.1 742,638 + -0.6 742,639 - -1.2 742,639 - -0.8 742,646 + +0.4 742,690 - +0.3 742,690 - +0.5 742,771 + -0.1 742,771 + +0.5 742,772 - -1.0 742,781 + +0.0 742,781 + +0.1 742,782 - +0.5 742,796 - -0.9 742,838 + +2.4 742,838 + +1.7 742,839 - +2.1 742,839 - +2.0 743,045 + ABZR87_RS19490 0.13 +2.0 743,164 - ABZR87_RS19490 0.19 +1.8 743,198 + ABZR87_RS19490 0.20 +1.4 743,199 - ABZR87_RS19490 0.20 +2.2 743,474 + ABZR87_RS19490 0.34 +2.4 743,474 + ABZR87_RS19490 0.34 +2.1 743,474 + ABZR87_RS19490 0.34 +2.4 743,475 - ABZR87_RS19490 0.34 +2.7 743,475 - ABZR87_RS19490 0.34 +1.6 743,475 - ABZR87_RS19490 0.34 +1.8 743,486 + ABZR87_RS19490 0.34 +4.1 743,486 + ABZR87_RS19490 0.34 +0.2 743,486 + ABZR87_RS19490 0.34 +1.8 743,487 - ABZR87_RS19490 0.34 +2.4 743,487 - ABZR87_RS19490 0.34 +1.5 743,490 - ABZR87_RS19490 0.34 +2.5 743,490 - ABZR87_RS19490 0.34 +1.9 743,490 - ABZR87_RS19490 0.34 +1.9 743,490 - ABZR87_RS19490 0.34 +2.0 743,490 - ABZR87_RS19490 0.34 +1.9 743,588 + ABZR87_RS19490 0.39 +1.6 743,589 - ABZR87_RS19490 0.39 +1.5 743,916 - ABZR87_RS19490 0.55 +0.7 743,916 - ABZR87_RS19490 0.55 +2.0 743,954 + ABZR87_RS19490 0.57 +1.6 743,954 + ABZR87_RS19490 0.57 +1.5 743,954 + ABZR87_RS19490 0.57 +2.3 743,954 + ABZR87_RS19490 0.57 +1.2 743,955 - ABZR87_RS19490 0.57 +2.0 743,955 - ABZR87_RS19490 0.57 +1.7 743,955 - ABZR87_RS19490 0.57 +2.1 743,955 - ABZR87_RS19490 0.57 +3.1 743,955 - ABZR87_RS19490 0.57 +0.8 743,955 - ABZR87_RS19490 0.57 +1.7 743,955 - ABZR87_RS19490 0.57 +1.8 743,955 - ABZR87_RS19490 0.57 +2.2 744,262 + ABZR87_RS19490 0.71 +1.8 744,262 + ABZR87_RS19490 0.71 +1.9 744,262 + ABZR87_RS19490 0.71 +2.0 744,262 + ABZR87_RS19490 0.71 +2.9 744,262 + ABZR87_RS19490 0.71 +1.6 744,262 + ABZR87_RS19490 0.71 +2.1 744,263 - ABZR87_RS19490 0.71 +1.3 744,263 - ABZR87_RS19490 0.71 +2.2 744,263 - ABZR87_RS19490 0.71 +2.8 744,263 - ABZR87_RS19490 0.71 +2.1 744,263 - ABZR87_RS19490 0.71 +1.6 744,263 - ABZR87_RS19490 0.71 +1.8 744,263 - ABZR87_RS19490 0.71 +2.3 744,348 + ABZR87_RS19490 0.75 +2.1 744,348 + ABZR87_RS19490 0.75 +1.7 744,349 - ABZR87_RS19490 0.75 +1.4 744,349 - ABZR87_RS19490 0.75 +1.4 744,376 + ABZR87_RS19490 0.77 +1.4 744,376 + ABZR87_RS19490 0.77 +1.8 744,376 + ABZR87_RS19490 0.77 +2.4 744,376 + ABZR87_RS19490 0.77 +1.8 744,376 + ABZR87_RS19490 0.77 +2.1 744,376 + ABZR87_RS19490 0.77 +2.0 744,376 + ABZR87_RS19490 0.77 +2.0 744,376 + ABZR87_RS19490 0.77 +0.8 744,376 + ABZR87_RS19490 0.77 +2.3 744,377 - ABZR87_RS19490 0.77 +1.8 744,377 - ABZR87_RS19490 0.77 +0.7 744,377 - ABZR87_RS19490 0.77 +1.9 744,377 - ABZR87_RS19490 0.77 +2.0 744,377 - ABZR87_RS19490 0.77 +1.5 744,377 - ABZR87_RS19490 0.77 +1.6 744,470 + ABZR87_RS19490 0.81 +3.1 744,470 + ABZR87_RS19490 0.81 +3.0 744,470 + ABZR87_RS19490 0.81 +0.8 744,470 + ABZR87_RS19490 0.81 +2.4 744,470 + ABZR87_RS19490 0.81 +1.8 744,470 + ABZR87_RS19490 0.81 +2.3 744,470 + ABZR87_RS19490 0.81 +2.2 744,471 - ABZR87_RS19490 0.81 +1.7 744,471 - ABZR87_RS19490 0.81 +4.1 744,471 - ABZR87_RS19490 0.81 +2.0 744,843 + +2.5 744,856 - +2.0 744,856 - +3.5 744,891 + +2.0 744,892 - -0.2 744,892 - +0.8 744,904 + +1.4 744,904 + +2.0 744,904 + +2.0 744,904 + +2.6 744,904 + +2.2 744,905 - -0.5 744,905 - -0.1 744,905 - -1.7 744,927 + +1.8 744,979 + +2.0 744,980 - -2.3 744,980 - -0.3 745,053 + +2.0 745,093 + +0.5 745,093 + +2.1 745,306 + ABZR87_RS19495 0.13 +1.3 745,306 + ABZR87_RS19495 0.13 +0.2 745,307 - ABZR87_RS19495 0.13 -0.3 745,431 - ABZR87_RS19495 0.24 +0.5 745,431 - ABZR87_RS19495 0.24 -0.2 745,572 + ABZR87_RS19495 0.37 -0.2 745,572 + ABZR87_RS19495 0.37 -0.4 745,572 + ABZR87_RS19495 0.37 -0.5 745,572 + ABZR87_RS19495 0.37 -2.6 745,572 + ABZR87_RS19495 0.37 -1.9 745,573 - ABZR87_RS19495 0.37 -1.6 745,573 - ABZR87_RS19495 0.37 -1.0 745,573 - ABZR87_RS19495 0.37 -0.8 745,573 - ABZR87_RS19495 0.37 -0.9 745,769 + ABZR87_RS19495 0.54 +0.4 745,769 + ABZR87_RS19495 0.54 -0.4 745,770 - ABZR87_RS19495 0.55 +2.8 745,787 - ABZR87_RS19495 0.56 +0.5
Or see this region's nucleotide sequence