Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19450 and ABZR87_RS19455 are separated by 263 nucleotides ABZR87_RS19455 and ABZR87_RS19460 are separated by 106 nucleotides ABZR87_RS19460 and ABZR87_RS19465 are separated by 87 nucleotides
ABZR87_RS19450: ABZR87_RS19450 - hypothetical protein, at 732,268 to 733,860
_RS19450
ABZR87_RS19455: ABZR87_RS19455 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 734,124 to 736,175
_RS19455
ABZR87_RS19460: ABZR87_RS19460 - hypothetical protein, at 736,282 to 736,488
_RS19460
ABZR87_RS19465: ABZR87_RS19465 - tyrosine-type recombinase/integrase, at 736,576 to 737,556
_RS19465
Position (kb) 734
735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 733.565 kb on - strand, within ABZR87_RS19450 at 733.565 kb on - strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.590 kb on + strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.591 kb on - strand, within ABZR87_RS19450 at 733.594 kb on + strand, within ABZR87_RS19450 at 733.595 kb on - strand, within ABZR87_RS19450 at 733.934 kb on + strand at 733.934 kb on + strand at 733.934 kb on + strand at 733.934 kb on + strand at 733.935 kb on - strand at 733.945 kb on - strand at 733.988 kb on + strand at 733.988 kb on + strand at 733.988 kb on + strand at 733.989 kb on - strand at 733.989 kb on - strand at 733.989 kb on - strand at 733.989 kb on - strand at 733.989 kb on - strand at 734.126 kb on - strand at 734.326 kb on + strand at 734.327 kb on - strand at 734.363 kb on - strand, within ABZR87_RS19455 at 734.363 kb on - strand, within ABZR87_RS19455 at 734.701 kb on + strand, within ABZR87_RS19455 at 734.701 kb on + strand, within ABZR87_RS19455 at 734.702 kb on - strand, within ABZR87_RS19455 at 734.782 kb on + strand, within ABZR87_RS19455 at 734.782 kb on + strand, within ABZR87_RS19455 at 735.297 kb on - strand, within ABZR87_RS19455 at 735.518 kb on - strand, within ABZR87_RS19455 at 735.518 kb on - strand, within ABZR87_RS19455 at 735.595 kb on + strand, within ABZR87_RS19455 at 735.596 kb on - strand, within ABZR87_RS19455 at 735.658 kb on + strand, within ABZR87_RS19455 at 735.658 kb on + strand, within ABZR87_RS19455 at 735.658 kb on + strand, within ABZR87_RS19455 at 735.659 kb on - strand, within ABZR87_RS19455 at 736.031 kb on - strand at 736.031 kb on - strand at 736.148 kb on - strand at 736.263 kb on + strand at 736.263 kb on + strand at 736.263 kb on + strand at 736.264 kb on - strand at 736.484 kb on + strand at 736.484 kb on + strand at 736.484 kb on + strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.500 kb on + strand at 736.500 kb on + strand at 736.501 kb on - strand at 736.561 kb on - strand at 736.561 kb on - strand at 736.691 kb on - strand, within ABZR87_RS19465 at 736.714 kb on + strand, within ABZR87_RS19465 at 736.715 kb on - strand, within ABZR87_RS19465 at 736.843 kb on + strand, within ABZR87_RS19465 at 736.843 kb on + strand, within ABZR87_RS19465 at 736.844 kb on - strand, within ABZR87_RS19465
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 733,565 - ABZR87_RS19450 0.81 -0.1 733,565 - ABZR87_RS19450 0.81 -0.1 733,590 + ABZR87_RS19450 0.83 -0.4 733,590 + ABZR87_RS19450 0.83 -0.1 733,590 + ABZR87_RS19450 0.83 -1.5 733,590 + ABZR87_RS19450 0.83 +0.7 733,590 + ABZR87_RS19450 0.83 -0.2 733,590 + ABZR87_RS19450 0.83 -0.2 733,590 + ABZR87_RS19450 0.83 -0.0 733,590 + ABZR87_RS19450 0.83 +0.5 733,590 + ABZR87_RS19450 0.83 +0.3 733,590 + ABZR87_RS19450 0.83 -0.5 733,590 + ABZR87_RS19450 0.83 -0.5 733,590 + ABZR87_RS19450 0.83 -0.3 733,590 + ABZR87_RS19450 0.83 -0.3 733,590 + ABZR87_RS19450 0.83 -1.0 733,591 - ABZR87_RS19450 0.83 +1.2 733,591 - ABZR87_RS19450 0.83 -0.2 733,591 - ABZR87_RS19450 0.83 -1.4 733,591 - ABZR87_RS19450 0.83 +1.1 733,591 - ABZR87_RS19450 0.83 -0.5 733,591 - ABZR87_RS19450 0.83 -0.9 733,591 - ABZR87_RS19450 0.83 -0.8 733,591 - ABZR87_RS19450 0.83 -0.1 733,591 - ABZR87_RS19450 0.83 -1.0 733,591 - ABZR87_RS19450 0.83 -0.3 733,594 + ABZR87_RS19450 0.83 -0.2 733,595 - ABZR87_RS19450 0.83 +0.6 733,934 + -1.3 733,934 + -0.7 733,934 + -0.4 733,934 + -0.5 733,935 - +0.2 733,945 - +0.6 733,988 + +0.5 733,988 + -0.6 733,988 + -0.3 733,989 - +0.3 733,989 - -0.1 733,989 - +1.1 733,989 - -0.3 733,989 - +0.0 734,126 - -1.0 734,326 + +0.8 734,327 - +0.2 734,363 - ABZR87_RS19455 0.12 +0.3 734,363 - ABZR87_RS19455 0.12 -1.4 734,701 + ABZR87_RS19455 0.28 -0.5 734,701 + ABZR87_RS19455 0.28 -1.0 734,702 - ABZR87_RS19455 0.28 -1.0 734,782 + ABZR87_RS19455 0.32 -0.0 734,782 + ABZR87_RS19455 0.32 -1.4 735,297 - ABZR87_RS19455 0.57 -0.2 735,518 - ABZR87_RS19455 0.68 +0.1 735,518 - ABZR87_RS19455 0.68 -0.4 735,595 + ABZR87_RS19455 0.72 -1.4 735,596 - ABZR87_RS19455 0.72 +2.8 735,658 + ABZR87_RS19455 0.75 -2.2 735,658 + ABZR87_RS19455 0.75 -0.9 735,658 + ABZR87_RS19455 0.75 -0.7 735,659 - ABZR87_RS19455 0.75 +0.1 736,031 - +0.2 736,031 - -0.2 736,148 - +0.4 736,263 + +0.3 736,263 + -1.4 736,263 + -0.0 736,264 - +0.0 736,484 + -0.7 736,484 + +0.0 736,484 + +0.5 736,485 - -0.2 736,485 - +1.4 736,485 - +1.1 736,485 - -1.9 736,485 - -1.4 736,485 - +0.2 736,500 + -0.3 736,500 + +0.4 736,501 - -0.2 736,561 - +1.5 736,561 - -0.1 736,691 - ABZR87_RS19465 0.12 +1.4 736,714 + ABZR87_RS19465 0.14 -0.1 736,715 - ABZR87_RS19465 0.14 -0.3 736,843 + ABZR87_RS19465 0.27 -1.2 736,843 + ABZR87_RS19465 0.27 -0.9 736,844 - ABZR87_RS19465 0.27 -1.2
Or see this region's nucleotide sequence