Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19005 and ABZR87_RS19010 are separated by 79 nucleotides ABZR87_RS19010 and ABZR87_RS19015 are separated by 301 nucleotides
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
ABZR87_RS19010: ABZR87_RS19010 - acyloxyacyl hydrolase, at 622,657 to 623,220
_RS19010
ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027
_RS19015
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.660 kb on - strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.395 kb on + strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.507 kb on - strand at 622.583 kb on + strand at 622.667 kb on + strand at 622.668 kb on - strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.745 kb on + strand, within ABZR87_RS19010 at 623.075 kb on + strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.429 kb on + strand at 623.429 kb on + strand at 623.429 kb on + strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.431 kb on + strand at 623.432 kb on - strand at 623.441 kb on + strand at 623.442 kb on - strand at 623.632 kb on - strand at 623.632 kb on - strand at 623.632 kb on - strand at 623.673 kb on + strand, within ABZR87_RS19015 at 623.673 kb on + strand, within ABZR87_RS19015 at 623.674 kb on - strand, within ABZR87_RS19015 at 623.674 kb on - strand, within ABZR87_RS19015 at 623.866 kb on - strand, within ABZR87_RS19015 at 623.887 kb on - strand, within ABZR87_RS19015 at 624.052 kb on - strand, within ABZR87_RS19015
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 621,659 + ABZR87_RS19005 0.32 +0.3 621,659 + ABZR87_RS19005 0.32 +0.2 621,659 + ABZR87_RS19005 0.32 -0.3 621,660 - ABZR87_RS19005 0.32 +0.1 621,765 + ABZR87_RS19005 0.40 -0.1 621,765 + ABZR87_RS19005 0.40 +0.6 621,813 + ABZR87_RS19005 0.43 -0.8 621,813 + ABZR87_RS19005 0.43 +1.4 621,814 - ABZR87_RS19005 0.43 -0.3 621,814 - ABZR87_RS19005 0.43 +0.3 621,822 - ABZR87_RS19005 0.44 -0.4 621,822 - ABZR87_RS19005 0.44 -1.4 622,155 + ABZR87_RS19005 0.69 +0.1 622,155 + ABZR87_RS19005 0.69 -1.5 622,155 + ABZR87_RS19005 0.69 -0.6 622,155 + ABZR87_RS19005 0.69 +0.0 622,156 - ABZR87_RS19005 0.69 -0.4 622,156 - ABZR87_RS19005 0.69 -0.2 622,395 + ABZR87_RS19005 0.86 -0.7 622,396 - ABZR87_RS19005 0.86 -0.2 622,396 - ABZR87_RS19005 0.86 -0.7 622,452 + +0.2 622,452 + +0.4 622,452 + -0.1 622,452 + +0.5 622,452 + -0.3 622,452 + -0.7 622,453 - +0.0 622,453 - +0.7 622,453 - -0.0 622,506 + -0.7 622,506 + +0.7 622,506 + -0.7 622,506 + -0.5 622,507 - -0.2 622,583 + -0.2 622,667 + -0.5 622,668 - -0.3 622,676 + -0.3 622,676 + -1.0 622,676 + -1.0 622,676 + -0.1 622,677 - -0.4 622,677 - +0.6 622,677 - +0.2 622,745 + ABZR87_RS19010 0.16 -1.9 623,075 + ABZR87_RS19010 0.74 -0.1 623,076 - ABZR87_RS19010 0.74 -1.4 623,076 - ABZR87_RS19010 0.74 -0.2 623,108 + ABZR87_RS19010 0.80 +0.5 623,108 + ABZR87_RS19010 0.80 -1.0 623,429 + +0.3 623,429 + -0.8 623,429 + -1.5 623,430 - -0.3 623,430 - +0.1 623,430 - -0.4 623,430 - -0.1 623,430 - -0.7 623,430 - -0.4 623,430 - -0.1 623,430 - +0.1 623,431 + -0.2 623,432 - -0.2 623,441 + -0.5 623,442 - -0.1 623,632 - +0.1 623,632 - -0.7 623,632 - -0.4 623,673 + ABZR87_RS19015 0.10 -0.8 623,673 + ABZR87_RS19015 0.10 -2.2 623,674 - ABZR87_RS19015 0.10 -1.0 623,674 - ABZR87_RS19015 0.10 -1.4 623,866 - ABZR87_RS19015 0.23 -1.3 623,887 - ABZR87_RS19015 0.24 -0.6 624,052 - ABZR87_RS19015 0.35 -0.8
Or see this region's nucleotide sequence