Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18245 and ABZR87_RS18250 are separated by 139 nucleotides ABZR87_RS18250 and ABZR87_RS18255 are separated by 85 nucleotides ABZR87_RS18255 and ABZR87_RS18260 are separated by 21 nucleotides
ABZR87_RS18245: ABZR87_RS18245 - fumarylacetoacetate hydrolase family protein, at 463,736 to 464,920
_RS18245
ABZR87_RS18250: ABZR87_RS18250 - IclR family transcriptional regulator, at 465,060 to 465,815
_RS18250
ABZR87_RS18255: ABZR87_RS18255 - LacI family DNA-binding transcriptional regulator, at 465,901 to 466,917
_RS18255
ABZR87_RS18260: ABZR87_RS18260 - IlvD/Edd family dehydratase, at 466,939 to 468,723
_RS18260
Position (kb) 465
466
467 Strain fitness (log2 ratio) -1
0
1 at 464.902 kb on - strand at 464.935 kb on + strand at 465.072 kb on + strand at 465.072 kb on + strand at 465.073 kb on - strand at 465.073 kb on - strand at 465.115 kb on + strand at 465.189 kb on + strand, within ABZR87_RS18250 at 465.190 kb on - strand, within ABZR87_RS18250 at 465.286 kb on - strand, within ABZR87_RS18250 at 465.286 kb on - strand, within ABZR87_RS18250 at 465.396 kb on + strand, within ABZR87_RS18250 at 465.397 kb on - strand, within ABZR87_RS18250 at 465.397 kb on - strand, within ABZR87_RS18250 at 465.813 kb on + strand at 465.814 kb on - strand at 466.510 kb on + strand, within ABZR87_RS18255 at 466.511 kb on - strand, within ABZR87_RS18255 at 466.539 kb on - strand, within ABZR87_RS18255 at 466.929 kb on + strand at 466.930 kb on + strand at 466.930 kb on + strand at 466.930 kb on + strand at 466.986 kb on - strand at 467.430 kb on - strand, within ABZR87_RS18260 at 467.498 kb on + strand, within ABZR87_RS18260 at 467.499 kb on - strand, within ABZR87_RS18260 at 467.521 kb on + strand, within ABZR87_RS18260 at 467.521 kb on + strand, within ABZR87_RS18260 at 467.522 kb on - strand, within ABZR87_RS18260 at 467.680 kb on - strand, within ABZR87_RS18260 at 467.768 kb on + strand, within ABZR87_RS18260
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 464,902 - +0.6 464,935 + +0.5 465,072 + -0.4 465,072 + +1.3 465,073 - -0.9 465,073 - -0.3 465,115 + -0.1 465,189 + ABZR87_RS18250 0.17 -0.2 465,190 - ABZR87_RS18250 0.17 -0.1 465,286 - ABZR87_RS18250 0.30 -0.1 465,286 - ABZR87_RS18250 0.30 -0.0 465,396 + ABZR87_RS18250 0.44 -0.6 465,397 - ABZR87_RS18250 0.45 +0.3 465,397 - ABZR87_RS18250 0.45 +0.1 465,813 + -0.7 465,814 - +1.0 466,510 + ABZR87_RS18255 0.60 +1.2 466,511 - ABZR87_RS18255 0.60 +1.1 466,539 - ABZR87_RS18255 0.63 -1.2 466,929 + +0.2 466,930 + -0.4 466,930 + +0.1 466,930 + -0.8 466,986 - -0.4 467,430 - ABZR87_RS18260 0.28 +0.2 467,498 + ABZR87_RS18260 0.31 -0.2 467,499 - ABZR87_RS18260 0.31 +0.4 467,521 + ABZR87_RS18260 0.33 -1.2 467,521 + ABZR87_RS18260 0.33 -0.3 467,522 - ABZR87_RS18260 0.33 -0.4 467,680 - ABZR87_RS18260 0.42 -0.4 467,768 + ABZR87_RS18260 0.46 +0.4
Or see this region's nucleotide sequence