Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18095 and ABZR87_RS18100 are separated by 8 nucleotides ABZR87_RS18100 and ABZR87_RS18105 overlap by 4 nucleotides ABZR87_RS18105 and ABZR87_RS18110 are separated by 103 nucleotides ABZR87_RS18110 and ABZR87_RS18115 are separated by 116 nucleotides
ABZR87_RS18095: ABZR87_RS18095 - hypothetical protein, at 424,226 to 424,900
_RS18095
ABZR87_RS18100: ABZR87_RS18100 - type III secretion system inner membrane ring lipoprotein SctJ, at 424,909 to 425,730
_RS18100
ABZR87_RS18105: ABZR87_RS18105 - hypothetical protein, at 425,727 to 426,152
_RS18105
ABZR87_RS18110: ABZR87_RS18110 - hypothetical protein, at 426,256 to 426,468
_RS18110
ABZR87_RS18115: ABZR87_RS18115 - FHA domain-containing protein, at 426,585 to 427,856
_RS18115
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.026 kb on + strand, within ABZR87_RS18100 at 425.090 kb on + strand, within ABZR87_RS18100 at 425.169 kb on - strand, within ABZR87_RS18100 at 425.255 kb on + strand, within ABZR87_RS18100 at 425.311 kb on + strand, within ABZR87_RS18100 at 425.384 kb on + strand, within ABZR87_RS18100 at 425.384 kb on + strand, within ABZR87_RS18100 at 425.385 kb on - strand, within ABZR87_RS18100 at 425.391 kb on - strand, within ABZR87_RS18100 at 425.391 kb on - strand, within ABZR87_RS18100 at 425.840 kb on + strand, within ABZR87_RS18105 at 425.980 kb on - strand, within ABZR87_RS18105 at 426.236 kb on + strand at 426.236 kb on + strand at 426.237 kb on - strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.254 kb on + strand at 426.255 kb on - strand at 426.255 kb on - strand at 426.817 kb on + strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.818 kb on - strand, within ABZR87_RS18115 at 426.868 kb on + strand, within ABZR87_RS18115 at 426.869 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 426.938 kb on - strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.123 kb on + strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115 at 427.124 kb on - strand, within ABZR87_RS18115
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 425,026 + ABZR87_RS18100 0.14 -0.2 425,026 + ABZR87_RS18100 0.14 +0.2 425,090 + ABZR87_RS18100 0.22 -0.3 425,169 - ABZR87_RS18100 0.32 +0.1 425,255 + ABZR87_RS18100 0.42 -0.0 425,311 + ABZR87_RS18100 0.49 -0.8 425,384 + ABZR87_RS18100 0.58 -0.2 425,384 + ABZR87_RS18100 0.58 +0.2 425,385 - ABZR87_RS18100 0.58 -0.5 425,391 - ABZR87_RS18100 0.59 -0.2 425,391 - ABZR87_RS18100 0.59 +1.2 425,840 + ABZR87_RS18105 0.27 -1.7 425,980 - ABZR87_RS18105 0.59 -0.4 426,236 + -0.1 426,236 + -0.6 426,237 - -0.2 426,254 + +0.1 426,254 + -0.8 426,254 + -0.2 426,254 + -2.0 426,254 + -0.2 426,254 + -0.8 426,255 - -0.6 426,255 - +0.7 426,817 + ABZR87_RS18115 0.18 -1.0 426,818 - ABZR87_RS18115 0.18 -0.2 426,818 - ABZR87_RS18115 0.18 -0.3 426,818 - ABZR87_RS18115 0.18 +0.0 426,868 + ABZR87_RS18115 0.22 -0.6 426,869 - ABZR87_RS18115 0.22 +0.7 426,938 - ABZR87_RS18115 0.28 +0.5 426,938 - ABZR87_RS18115 0.28 +0.2 427,123 + ABZR87_RS18115 0.42 -0.3 427,123 + ABZR87_RS18115 0.42 -0.8 427,123 + ABZR87_RS18115 0.42 +0.5 427,123 + ABZR87_RS18115 0.42 +1.2 427,123 + ABZR87_RS18115 0.42 -0.6 427,123 + ABZR87_RS18115 0.42 -1.5 427,123 + ABZR87_RS18115 0.42 +0.1 427,124 - ABZR87_RS18115 0.42 -2.8 427,124 - ABZR87_RS18115 0.42 -0.4
Or see this region's nucleotide sequence