Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18030 and ABZR87_RS18035 are separated by 14 nucleotides ABZR87_RS18035 and ABZR87_RS18040 are separated by 8 nucleotides ABZR87_RS18040 and ABZR87_RS18045 are separated by 68 nucleotides
ABZR87_RS18030: ABZR87_RS18030 - flagellar biosynthesis protein FlhF, at 401,849 to 403,756
_RS18030
ABZR87_RS18035: ABZR87_RS18035 - flagellar synthesis regulator FleN, at 403,771 to 404,553
_RS18035
ABZR87_RS18040: ABZR87_RS18040 - RNA polymerase sigma factor FliA, at 404,562 to 405,323
_RS18040
ABZR87_RS18045: ABZR87_RS18045 - MBL fold metallo-hydrolase, at 405,392 to 406,483
_RS18045
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 403.565 kb on + strand, within ABZR87_RS18030 at 403.566 kb on - strand at 403.705 kb on - strand at 403.923 kb on + strand, within ABZR87_RS18035 at 404.233 kb on + strand, within ABZR87_RS18035 at 404.285 kb on + strand, within ABZR87_RS18035 at 404.286 kb on - strand, within ABZR87_RS18035 at 404.548 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.596 kb on + strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.790 kb on + strand, within ABZR87_RS18040 at 404.805 kb on - strand, within ABZR87_RS18040 at 404.805 kb on - strand, within ABZR87_RS18040 at 404.973 kb on + strand, within ABZR87_RS18040 at 404.973 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.018 kb on + strand, within ABZR87_RS18040 at 405.019 kb on - strand, within ABZR87_RS18040 at 405.183 kb on + strand, within ABZR87_RS18040 at 405.184 kb on - strand, within ABZR87_RS18040 at 405.184 kb on - strand, within ABZR87_RS18040 at 405.257 kb on + strand at 405.257 kb on + strand at 405.708 kb on + strand, within ABZR87_RS18045 at 405.781 kb on - strand, within ABZR87_RS18045 at 406.092 kb on + strand, within ABZR87_RS18045 at 406.092 kb on + strand, within ABZR87_RS18045 at 406.093 kb on - strand, within ABZR87_RS18045
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 403,565 + ABZR87_RS18030 0.90 -0.6 403,566 - -1.4 403,705 - -1.5 403,923 + ABZR87_RS18035 0.19 -1.9 404,233 + ABZR87_RS18035 0.59 -0.7 404,285 + ABZR87_RS18035 0.66 -0.6 404,286 - ABZR87_RS18035 0.66 -0.7 404,548 + +0.6 404,591 + +0.6 404,591 + -0.3 404,591 + -2.6 404,591 + -1.2 404,591 + -0.8 404,591 + +0.6 404,592 - -1.9 404,592 - -0.5 404,592 - -0.0 404,592 - -2.2 404,592 - -0.5 404,592 - -1.0 404,592 - -3.3 404,592 - -0.8 404,592 - -1.2 404,592 - -1.5 404,592 - -1.2 404,592 - +1.2 404,595 + -1.1 404,595 + -1.7 404,595 + -1.2 404,595 + -0.5 404,595 + -0.9 404,595 + -1.0 404,595 + -0.5 404,596 + -1.2 404,596 - -2.0 404,596 - -1.6 404,596 - -1.5 404,596 - +0.9 404,596 - -2.2 404,596 - +0.2 404,596 - +0.8 404,596 - -0.7 404,596 - -1.0 404,596 - -1.6 404,596 - -0.5 404,640 + ABZR87_RS18040 0.10 -2.2 404,640 + ABZR87_RS18040 0.10 -1.3 404,640 + ABZR87_RS18040 0.10 -0.2 404,641 - ABZR87_RS18040 0.10 -1.4 404,641 - ABZR87_RS18040 0.10 -1.0 404,641 - ABZR87_RS18040 0.10 -0.7 404,641 - ABZR87_RS18040 0.10 -1.8 404,641 - ABZR87_RS18040 0.10 -0.8 404,790 + ABZR87_RS18040 0.30 -0.1 404,805 - ABZR87_RS18040 0.32 -1.2 404,805 - ABZR87_RS18040 0.32 -0.2 404,973 + ABZR87_RS18040 0.54 -1.6 404,973 + ABZR87_RS18040 0.54 -0.8 405,015 + ABZR87_RS18040 0.59 -0.8 405,015 + ABZR87_RS18040 0.59 -3.1 405,015 + ABZR87_RS18040 0.59 -1.5 405,016 - ABZR87_RS18040 0.60 -0.8 405,016 - ABZR87_RS18040 0.60 -1.0 405,016 - ABZR87_RS18040 0.60 -3.5 405,018 + ABZR87_RS18040 0.60 -1.1 405,019 - ABZR87_RS18040 0.60 -1.0 405,183 + ABZR87_RS18040 0.81 -0.2 405,184 - ABZR87_RS18040 0.82 -0.5 405,184 - ABZR87_RS18040 0.82 -2.7 405,257 + +0.6 405,257 + -1.0 405,708 + ABZR87_RS18045 0.29 -0.3 405,781 - ABZR87_RS18045 0.36 +0.3 406,092 + ABZR87_RS18045 0.64 -1.1 406,092 + ABZR87_RS18045 0.64 -0.7 406,093 - ABZR87_RS18045 0.64 -0.2
Or see this region's nucleotide sequence