Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18015

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18010 and ABZR87_RS18015 are separated by 321 nucleotidesABZR87_RS18015 and ABZR87_RS18020 are separated by 58 nucleotides ABZR87_RS18010: ABZR87_RS18010 - arylsulfatase, at 395,036 to 397,009 _RS18010 ABZR87_RS18015: ABZR87_RS18015 - flagellar biosynthesis protein FlhB, at 397,331 to 398,506 _RS18015 ABZR87_RS18020: ABZR87_RS18020 - YitT family protein, at 398,565 to 399,218 _RS18020 Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 396.357 kb on + strand, within ABZR87_RS18010at 396.357 kb on + strand, within ABZR87_RS18010at 396.357 kb on + strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.358 kb on - strand, within ABZR87_RS18010at 396.375 kb on + strand, within ABZR87_RS18010at 396.375 kb on + strand, within ABZR87_RS18010at 396.376 kb on - strand, within ABZR87_RS18010at 396.376 kb on - strand, within ABZR87_RS18010at 396.376 kb on - strand, within ABZR87_RS18010at 396.438 kb on + strand, within ABZR87_RS18010at 396.438 kb on + strand, within ABZR87_RS18010at 396.438 kb on + strand, within ABZR87_RS18010at 396.520 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.531 kb on + strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.532 kb on - strand, within ABZR87_RS18010at 396.541 kb on - strand, within ABZR87_RS18010at 396.591 kb on + strand, within ABZR87_RS18010at 396.805 kb on - strand, within ABZR87_RS18010at 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.828 kb on + strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 396.829 kb on - strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.055 kb on + strandat 397.072 kb on + strandat 397.073 kb on - strandat 397.073 kb on - strandat 397.073 kb on - strandat 397.100 kb on + strandat 397.100 kb on + strandat 397.265 kb on + strandat 397.265 kb on + strandat 397.265 kb on + strandat 397.266 kb on - strandat 397.538 kb on + strand, within ABZR87_RS18015at 397.538 kb on + strand, within ABZR87_RS18015at 397.538 kb on + strand, within ABZR87_RS18015at 397.539 kb on - strand, within ABZR87_RS18015at 397.544 kb on + strand, within ABZR87_RS18015at 397.545 kb on - strand, within ABZR87_RS18015at 397.545 kb on - strand, within ABZR87_RS18015at 397.572 kb on - strand, within ABZR87_RS18015at 397.572 kb on - strand, within ABZR87_RS18015at 397.824 kb on - strand, within ABZR87_RS18015at 397.824 kb on - strand, within ABZR87_RS18015at 398.144 kb on + strand, within ABZR87_RS18015at 398.145 kb on - strand, within ABZR87_RS18015at 398.145 kb on - strand, within ABZR87_RS18015at 398.145 kb on - strand, within ABZR87_RS18015at 398.295 kb on - strand, within ABZR87_RS18015at 398.336 kb on + strand, within ABZR87_RS18015at 398.363 kb on + strand, within ABZR87_RS18015at 398.363 kb on + strand, within ABZR87_RS18015at 398.363 kb on + strand, within ABZR87_RS18015at 398.363 kb on + strand, within ABZR87_RS18015at 398.363 kb on + strand, within ABZR87_RS18015at 398.363 kb on + strand, within ABZR87_RS18015at 398.364 kb on - strand, within ABZR87_RS18015at 398.364 kb on - strand, within ABZR87_RS18015at 398.369 kb on + strand, within ABZR87_RS18015at 398.369 kb on + strand, within ABZR87_RS18015at 398.369 kb on + strand, within ABZR87_RS18015at 398.370 kb on - strand, within ABZR87_RS18015at 398.582 kb on + strandat 398.582 kb on + strandat 398.582 kb on + strandat 398.583 kb on + strandat 398.583 kb on - strandat 398.583 kb on - strandat 398.583 kb on - strandat 398.584 kb on + strandat 398.585 kb on - strandat 398.585 kb on - strandat 398.585 kb on - strandat 398.585 kb on - strandat 398.585 kb on - strandat 398.585 kb on - strandat 398.874 kb on + strand, within ABZR87_RS18020at 398.874 kb on + strand, within ABZR87_RS18020at 398.874 kb on + strand, within ABZR87_RS18020at 398.875 kb on - strand, within ABZR87_RS18020at 398.875 kb on - strand, within ABZR87_RS18020at 398.875 kb on - strand, within ABZR87_RS18020at 399.028 kb on + strand, within ABZR87_RS18020at 399.029 kb on - strand, within ABZR87_RS18020at 399.133 kb on + strand, within ABZR87_RS18020at 399.134 kb on - strand, within ABZR87_RS18020at 399.307 kb on + strandat 399.308 kb on - strandat 399.308 kb on - strandat 399.443 kb on - strandat 399.443 kb on - strandat 399.506 kb on + strandat 399.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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396,357 + ABZR87_RS18010 0.67 -0.7
396,357 + ABZR87_RS18010 0.67 +1.8
396,357 + ABZR87_RS18010 0.67 +0.3
396,358 - ABZR87_RS18010 0.67 +0.0
396,358 - ABZR87_RS18010 0.67 -0.3
396,358 - ABZR87_RS18010 0.67 -1.1
396,358 - ABZR87_RS18010 0.67 +0.7
396,375 + ABZR87_RS18010 0.68 +0.5
396,375 + ABZR87_RS18010 0.68 -2.4
396,376 - ABZR87_RS18010 0.68 -0.6
396,376 - ABZR87_RS18010 0.68 -0.2
396,376 - ABZR87_RS18010 0.68 +0.6
396,438 + ABZR87_RS18010 0.71 +0.1
396,438 + ABZR87_RS18010 0.71 -0.0
396,438 + ABZR87_RS18010 0.71 +0.3
396,520 + ABZR87_RS18010 0.75 -0.8
396,531 + ABZR87_RS18010 0.76 +0.8
396,531 + ABZR87_RS18010 0.76 +0.2
396,531 + ABZR87_RS18010 0.76 -0.9
396,531 + ABZR87_RS18010 0.76 -0.8
396,532 - ABZR87_RS18010 0.76 +1.1
396,532 - ABZR87_RS18010 0.76 +0.4
396,532 - ABZR87_RS18010 0.76 -0.2
396,532 - ABZR87_RS18010 0.76 +1.5
396,532 - ABZR87_RS18010 0.76 +0.1
396,532 - ABZR87_RS18010 0.76 +0.5
396,541 - ABZR87_RS18010 0.76 +0.1
396,591 + ABZR87_RS18010 0.79 +1.2
396,805 - ABZR87_RS18010 0.90 -0.6
396,828 + -0.1
396,828 + +0.2
396,828 + +0.3
396,828 + +0.0
396,828 + -0.5
396,828 + +0.1
396,829 - -0.5
396,829 - +1.6
396,829 - -0.0
396,829 - +0.3
396,829 - -0.0
396,829 - -0.4
397,055 + +0.5
397,055 + +0.1
397,055 + -1.0
397,055 + -0.8
397,055 + -0.3
397,072 + +0.2
397,073 - +0.0
397,073 - -0.4
397,073 - -0.4
397,100 + -0.8
397,100 + -0.3
397,265 + +0.1
397,265 + -0.1
397,265 + +0.2
397,266 - -1.9
397,538 + ABZR87_RS18015 0.18 -0.2
397,538 + ABZR87_RS18015 0.18 -2.1
397,538 + ABZR87_RS18015 0.18 +0.3
397,539 - ABZR87_RS18015 0.18 -0.9
397,544 + ABZR87_RS18015 0.18 -0.7
397,545 - ABZR87_RS18015 0.18 -3.7
397,545 - ABZR87_RS18015 0.18 -1.9
397,572 - ABZR87_RS18015 0.20 -1.7
397,572 - ABZR87_RS18015 0.20 -3.1
397,824 - ABZR87_RS18015 0.42 -1.2
397,824 - ABZR87_RS18015 0.42 +0.5
398,144 + ABZR87_RS18015 0.69 -0.7
398,145 - ABZR87_RS18015 0.69 -1.3
398,145 - ABZR87_RS18015 0.69 -2.4
398,145 - ABZR87_RS18015 0.69 -0.4
398,295 - ABZR87_RS18015 0.82 -0.3
398,336 + ABZR87_RS18015 0.85 -0.4
398,363 + ABZR87_RS18015 0.88 +0.2
398,363 + ABZR87_RS18015 0.88 -0.5
398,363 + ABZR87_RS18015 0.88 -2.1
398,363 + ABZR87_RS18015 0.88 -1.0
398,363 + ABZR87_RS18015 0.88 -0.4
398,363 + ABZR87_RS18015 0.88 -2.8
398,364 - ABZR87_RS18015 0.88 +0.1
398,364 - ABZR87_RS18015 0.88 -0.5
398,369 + ABZR87_RS18015 0.88 -0.8
398,369 + ABZR87_RS18015 0.88 -1.8
398,369 + ABZR87_RS18015 0.88 -1.0
398,370 - ABZR87_RS18015 0.88 -0.4
398,582 + +0.5
398,582 + +0.1
398,582 + +3.0
398,583 + -1.5
398,583 - -1.5
398,583 - -0.7
398,583 - +0.6
398,584 + -0.8
398,585 - -0.8
398,585 - -0.8
398,585 - -0.4
398,585 - +0.1
398,585 - +0.2
398,585 - +0.9
398,874 + ABZR87_RS18020 0.47 -1.0
398,874 + ABZR87_RS18020 0.47 -0.7
398,874 + ABZR87_RS18020 0.47 -0.2
398,875 - ABZR87_RS18020 0.47 +0.4
398,875 - ABZR87_RS18020 0.47 -0.4
398,875 - ABZR87_RS18020 0.47 -0.5
399,028 + ABZR87_RS18020 0.71 +0.0
399,029 - ABZR87_RS18020 0.71 +0.5
399,133 + ABZR87_RS18020 0.87 +0.7
399,134 - ABZR87_RS18020 0.87 -0.5
399,307 + +0.4
399,308 - -0.8
399,308 - -0.9
399,443 - -0.1
399,443 - -1.4
399,506 + -0.4
399,506 + -2.5

Or see this region's nucleotide sequence