Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17990 and ABZR87_RS17995 are separated by 149 nucleotides ABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotides ABZR87_RS18000 and ABZR87_RS18005 are separated by 75 nucleotides
ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638
_RS17990
ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189
_RS17995
ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857
_RS18000
ABZR87_RS18005: ABZR87_RS18005 - formylglycine-generating enzyme family protein, at 393,933 to 395,036
_RS18005
Position (kb) 393
394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.261 kb on + strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.519 kb on + strand, within ABZR87_RS17990 at 392.637 kb on - strand at 392.655 kb on + strand at 392.655 kb on + strand at 392.656 kb on - strand at 392.656 kb on - strand at 392.730 kb on - strand at 392.766 kb on + strand at 392.854 kb on - strand, within ABZR87_RS17995 at 393.126 kb on + strand, within ABZR87_RS17995 at 393.127 kb on - strand, within ABZR87_RS17995 at 393.378 kb on + strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 394.168 kb on + strand, within ABZR87_RS18005 at 394.169 kb on - strand, within ABZR87_RS18005 at 394.169 kb on - strand, within ABZR87_RS18005 at 394.191 kb on + strand, within ABZR87_RS18005 at 394.191 kb on + strand, within ABZR87_RS18005 at 394.191 kb on + strand, within ABZR87_RS18005 at 394.210 kb on + strand, within ABZR87_RS18005 at 394.210 kb on + strand, within ABZR87_RS18005 at 394.210 kb on + strand, within ABZR87_RS18005 at 394.210 kb on + strand, within ABZR87_RS18005 at 394.210 kb on + strand, within ABZR87_RS18005 at 394.234 kb on + strand, within ABZR87_RS18005 at 394.235 kb on - strand, within ABZR87_RS18005 at 394.235 kb on - strand, within ABZR87_RS18005 at 394.307 kb on - strand, within ABZR87_RS18005 at 394.307 kb on - strand, within ABZR87_RS18005 at 394.307 kb on - strand, within ABZR87_RS18005 at 394.432 kb on + strand, within ABZR87_RS18005 at 394.432 kb on + strand, within ABZR87_RS18005 at 394.432 kb on + strand, within ABZR87_RS18005 at 394.552 kb on + strand, within ABZR87_RS18005 at 394.552 kb on + strand, within ABZR87_RS18005 at 394.553 kb on - strand, within ABZR87_RS18005 at 394.553 kb on - strand, within ABZR87_RS18005 at 394.630 kb on + strand, within ABZR87_RS18005 at 394.722 kb on - strand, within ABZR87_RS18005 at 394.754 kb on - strand, within ABZR87_RS18005
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 392,261 + ABZR87_RS17990 0.66 -0.6 392,262 - ABZR87_RS17990 0.66 -0.2 392,262 - ABZR87_RS17990 0.66 +0.2 392,312 + ABZR87_RS17990 0.71 -1.5 392,312 + ABZR87_RS17990 0.71 -0.7 392,313 - ABZR87_RS17990 0.71 -1.1 392,313 - ABZR87_RS17990 0.71 +1.2 392,313 - ABZR87_RS17990 0.71 -0.8 392,313 - ABZR87_RS17990 0.71 -0.1 392,313 - ABZR87_RS17990 0.71 -0.3 392,483 + ABZR87_RS17990 0.86 +0.0 392,483 + ABZR87_RS17990 0.86 +1.8 392,484 - ABZR87_RS17990 0.86 -1.7 392,484 - ABZR87_RS17990 0.86 -1.6 392,484 - ABZR87_RS17990 0.86 -1.0 392,484 - ABZR87_RS17990 0.86 +0.8 392,519 + ABZR87_RS17990 0.89 -0.5 392,637 - -0.2 392,655 + -0.9 392,655 + +1.8 392,656 - -0.2 392,656 - -0.4 392,730 - -0.1 392,766 + -0.9 392,854 - ABZR87_RS17995 0.16 -0.2 393,126 + ABZR87_RS17995 0.84 -1.5 393,127 - ABZR87_RS17995 0.84 -0.9 393,378 + ABZR87_RS18000 0.28 -0.3 393,379 - ABZR87_RS18000 0.28 -1.0 393,379 - ABZR87_RS18000 0.28 +0.4 393,379 - ABZR87_RS18000 0.28 -0.5 393,379 - ABZR87_RS18000 0.28 -0.4 394,168 + ABZR87_RS18005 0.21 -1.4 394,169 - ABZR87_RS18005 0.21 -1.2 394,169 - ABZR87_RS18005 0.21 +0.5 394,191 + ABZR87_RS18005 0.23 +0.9 394,191 + ABZR87_RS18005 0.23 -0.4 394,191 + ABZR87_RS18005 0.23 -0.6 394,210 + ABZR87_RS18005 0.25 -0.3 394,210 + ABZR87_RS18005 0.25 -0.1 394,210 + ABZR87_RS18005 0.25 +0.6 394,210 + ABZR87_RS18005 0.25 -0.2 394,210 + ABZR87_RS18005 0.25 +1.1 394,234 + ABZR87_RS18005 0.27 +0.7 394,235 - ABZR87_RS18005 0.27 +0.4 394,235 - ABZR87_RS18005 0.27 -0.0 394,307 - ABZR87_RS18005 0.34 -0.6 394,307 - ABZR87_RS18005 0.34 +0.3 394,307 - ABZR87_RS18005 0.34 -0.1 394,432 + ABZR87_RS18005 0.45 -1.9 394,432 + ABZR87_RS18005 0.45 -1.6 394,432 + ABZR87_RS18005 0.45 +0.5 394,552 + ABZR87_RS18005 0.56 +0.5 394,552 + ABZR87_RS18005 0.56 -0.4 394,553 - ABZR87_RS18005 0.56 -0.4 394,553 - ABZR87_RS18005 0.56 -0.0 394,630 + ABZR87_RS18005 0.63 -0.2 394,722 - ABZR87_RS18005 0.71 +0.4 394,754 - ABZR87_RS18005 0.74 +0.1
Or see this region's nucleotide sequence