Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17980 and ABZR87_RS17985 are separated by 89 nucleotides ABZR87_RS17985 and ABZR87_RS17990 are separated by 139 nucleotides ABZR87_RS17990 and ABZR87_RS17995 are separated by 149 nucleotides ABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotides
ABZR87_RS17980: ABZR87_RS17980 - CheR family methyltransferase, at 389,792 to 390,670
_RS17980
ABZR87_RS17985: ABZR87_RS17985 - chemoreceptor glutamine deamidase CheD, at 390,760 to 391,377
_RS17985
ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638
_RS17990
ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189
_RS17995
ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857
_RS18000
Position (kb) 391
392
393 Strain fitness (log2 ratio) -1
0
1
2 at 390.626 kb on + strand at 390.799 kb on + strand at 390.800 kb on - strand at 390.800 kb on - strand at 390.803 kb on - strand at 390.803 kb on - strand at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.850 kb on + strand, within ABZR87_RS17985 at 390.851 kb on - strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.045 kb on + strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.046 kb on - strand, within ABZR87_RS17985 at 391.119 kb on + strand, within ABZR87_RS17985 at 391.120 kb on - strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.228 kb on + strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.313 kb on - strand, within ABZR87_RS17985 at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.376 kb on - strand at 391.432 kb on + strand at 391.433 kb on - strand at 391.433 kb on - strand at 392.261 kb on + strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.262 kb on - strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.312 kb on + strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.313 kb on - strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.483 kb on + strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.484 kb on - strand, within ABZR87_RS17990 at 392.519 kb on + strand, within ABZR87_RS17990 at 392.637 kb on - strand at 392.655 kb on + strand at 392.655 kb on + strand at 392.656 kb on - strand at 392.656 kb on - strand at 392.730 kb on - strand at 392.766 kb on + strand at 392.854 kb on - strand, within ABZR87_RS17995 at 393.126 kb on + strand, within ABZR87_RS17995 at 393.127 kb on - strand, within ABZR87_RS17995 at 393.378 kb on + strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000 at 393.379 kb on - strand, within ABZR87_RS18000
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 390,626 + -0.3 390,799 + -0.1 390,800 - +0.8 390,800 - -0.9 390,803 - -0.3 390,803 - +0.4 390,850 + ABZR87_RS17985 0.15 -1.2 390,850 + ABZR87_RS17985 0.15 +0.6 390,850 + ABZR87_RS17985 0.15 -0.0 390,851 - ABZR87_RS17985 0.15 -0.7 391,045 + ABZR87_RS17985 0.46 +0.2 391,045 + ABZR87_RS17985 0.46 +1.4 391,045 + ABZR87_RS17985 0.46 -0.9 391,045 + ABZR87_RS17985 0.46 -0.4 391,045 + ABZR87_RS17985 0.46 +0.8 391,045 + ABZR87_RS17985 0.46 +0.5 391,046 - ABZR87_RS17985 0.46 -0.3 391,046 - ABZR87_RS17985 0.46 -0.8 391,046 - ABZR87_RS17985 0.46 -1.1 391,119 + ABZR87_RS17985 0.58 -0.8 391,120 - ABZR87_RS17985 0.58 -1.1 391,228 + ABZR87_RS17985 0.76 -0.5 391,228 + ABZR87_RS17985 0.76 +0.1 391,228 + ABZR87_RS17985 0.76 -0.7 391,313 - ABZR87_RS17985 0.89 -0.2 391,313 - ABZR87_RS17985 0.89 +0.0 391,376 - -0.1 391,376 - -0.8 391,376 - +0.4 391,376 - -1.1 391,376 - -0.0 391,432 + -1.5 391,433 - +0.3 391,433 - +0.1 392,261 + ABZR87_RS17990 0.66 -0.6 392,262 - ABZR87_RS17990 0.66 -0.2 392,262 - ABZR87_RS17990 0.66 +0.2 392,312 + ABZR87_RS17990 0.71 -1.5 392,312 + ABZR87_RS17990 0.71 -0.7 392,313 - ABZR87_RS17990 0.71 -1.1 392,313 - ABZR87_RS17990 0.71 +1.2 392,313 - ABZR87_RS17990 0.71 -0.8 392,313 - ABZR87_RS17990 0.71 -0.1 392,313 - ABZR87_RS17990 0.71 -0.3 392,483 + ABZR87_RS17990 0.86 +0.0 392,483 + ABZR87_RS17990 0.86 +1.8 392,484 - ABZR87_RS17990 0.86 -1.7 392,484 - ABZR87_RS17990 0.86 -1.6 392,484 - ABZR87_RS17990 0.86 -1.0 392,484 - ABZR87_RS17990 0.86 +0.8 392,519 + ABZR87_RS17990 0.89 -0.5 392,637 - -0.2 392,655 + -0.9 392,655 + +1.8 392,656 - -0.2 392,656 - -0.4 392,730 - -0.1 392,766 + -0.9 392,854 - ABZR87_RS17995 0.16 -0.2 393,126 + ABZR87_RS17995 0.84 -1.5 393,127 - ABZR87_RS17995 0.84 -0.9 393,378 + ABZR87_RS18000 0.28 -0.3 393,379 - ABZR87_RS18000 0.28 -1.0 393,379 - ABZR87_RS18000 0.28 +0.4 393,379 - ABZR87_RS18000 0.28 -0.5 393,379 - ABZR87_RS18000 0.28 -0.4
Or see this region's nucleotide sequence