Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17935 and ABZR87_RS17940 are separated by 71 nucleotides ABZR87_RS17940 and ABZR87_RS17945 are separated by 107 nucleotides ABZR87_RS17945 and ABZR87_RS17950 are separated by 79 nucleotides
ABZR87_RS17935: ABZR87_RS17935 - flagellar transcriptional regulator FlhC, at 379,371 to 379,931
_RS17935
ABZR87_RS17940: ABZR87_RS17940 - hypothetical protein, at 380,003 to 380,374
_RS17940
ABZR87_RS17945: ABZR87_RS17945 - flagellar motor stator protein MotA, at 380,482 to 381,342
_RS17945
ABZR87_RS17950: ABZR87_RS17950 - flagellar motor protein MotB, at 381,422 to 382,369
_RS17950
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.500 kb on + strand, within ABZR87_RS17935 at 379.500 kb on + strand, within ABZR87_RS17935 at 379.500 kb on + strand, within ABZR87_RS17935 at 379.501 kb on - strand, within ABZR87_RS17935 at 379.501 kb on - strand, within ABZR87_RS17935 at 379.608 kb on + strand, within ABZR87_RS17935 at 379.608 kb on + strand, within ABZR87_RS17935 at 379.609 kb on - strand, within ABZR87_RS17935 at 379.665 kb on + strand, within ABZR87_RS17935 at 379.665 kb on + strand, within ABZR87_RS17935 at 379.675 kb on - strand, within ABZR87_RS17935 at 379.932 kb on + strand at 379.933 kb on - strand at 379.965 kb on + strand at 379.965 kb on + strand at 379.966 kb on - strand at 379.966 kb on - strand at 379.966 kb on - strand at 379.966 kb on - strand at 379.974 kb on - strand at 380.025 kb on + strand at 380.026 kb on - strand at 380.026 kb on - strand at 380.031 kb on + strand at 380.037 kb on + strand at 380.043 kb on - strand, within ABZR87_RS17940 at 380.047 kb on - strand, within ABZR87_RS17940 at 380.062 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.212 kb on + strand, within ABZR87_RS17940 at 380.212 kb on + strand, within ABZR87_RS17940 at 380.213 kb on - strand, within ABZR87_RS17940 at 380.213 kb on - strand, within ABZR87_RS17940 at 380.213 kb on - strand, within ABZR87_RS17940 at 380.371 kb on - strand at 380.433 kb on + strand at 380.445 kb on + strand at 380.445 kb on + strand at 380.445 kb on + strand at 380.446 kb on - strand at 380.446 kb on - strand at 380.446 kb on - strand at 380.486 kb on + strand at 380.486 kb on + strand at 380.487 kb on - strand at 380.500 kb on + strand at 380.501 kb on - strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.533 kb on + strand at 380.534 kb on - strand at 380.534 kb on - strand at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.704 kb on + strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.705 kb on - strand, within ABZR87_RS17945 at 380.706 kb on + strand, within ABZR87_RS17945 at 380.706 kb on + strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.707 kb on - strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.728 kb on + strand, within ABZR87_RS17945 at 380.729 kb on - strand, within ABZR87_RS17945 at 380.729 kb on - strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.818 kb on + strand, within ABZR87_RS17945 at 380.819 kb on - strand, within ABZR87_RS17945 at 380.819 kb on - strand, within ABZR87_RS17945 at 380.867 kb on - strand, within ABZR87_RS17945 at 381.105 kb on + strand, within ABZR87_RS17945 at 381.235 kb on + strand, within ABZR87_RS17945 at 381.355 kb on + strand at 381.355 kb on + strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.390 kb on - strand at 381.513 kb on - strand at 381.605 kb on + strand, within ABZR87_RS17950 at 381.606 kb on - strand, within ABZR87_RS17950 at 381.606 kb on - strand, within ABZR87_RS17950 at 381.606 kb on - strand, within ABZR87_RS17950 at 381.947 kb on + strand, within ABZR87_RS17950 at 381.947 kb on + strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.948 kb on - strand, within ABZR87_RS17950 at 381.949 kb on + strand, within ABZR87_RS17950 at 382.037 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.190 kb on + strand, within ABZR87_RS17950 at 382.191 kb on - strand, within ABZR87_RS17950 at 382.191 kb on - strand, within ABZR87_RS17950 at 382.191 kb on - strand, within ABZR87_RS17950
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 379,500 + ABZR87_RS17935 0.23 +0.1 379,500 + ABZR87_RS17935 0.23 -0.1 379,500 + ABZR87_RS17935 0.23 +0.4 379,501 - ABZR87_RS17935 0.23 +0.1 379,501 - ABZR87_RS17935 0.23 -0.1 379,608 + ABZR87_RS17935 0.42 +0.4 379,608 + ABZR87_RS17935 0.42 +0.1 379,609 - ABZR87_RS17935 0.42 -0.5 379,665 + ABZR87_RS17935 0.52 +1.7 379,665 + ABZR87_RS17935 0.52 +0.4 379,675 - ABZR87_RS17935 0.54 -0.4 379,932 + -0.1 379,933 - +0.3 379,965 + -0.2 379,965 + +1.2 379,966 - +0.0 379,966 - -0.4 379,966 - -0.8 379,966 - +0.2 379,974 - +0.3 380,025 + +0.2 380,026 - -0.4 380,026 - -1.0 380,031 + -0.3 380,037 + -0.4 380,043 - ABZR87_RS17940 0.11 -0.3 380,047 - ABZR87_RS17940 0.12 -1.1 380,062 + ABZR87_RS17940 0.16 +1.1 380,082 + ABZR87_RS17940 0.21 +1.0 380,082 + ABZR87_RS17940 0.21 -0.3 380,082 + ABZR87_RS17940 0.21 -0.1 380,082 + ABZR87_RS17940 0.21 -1.0 380,082 + ABZR87_RS17940 0.21 +1.8 380,082 + ABZR87_RS17940 0.21 -0.3 380,082 + ABZR87_RS17940 0.21 -1.0 380,082 + ABZR87_RS17940 0.21 +0.2 380,082 + ABZR87_RS17940 0.21 +0.3 380,082 + ABZR87_RS17940 0.21 +1.3 380,082 + ABZR87_RS17940 0.21 +0.2 380,082 + ABZR87_RS17940 0.21 -0.4 380,082 + ABZR87_RS17940 0.21 +1.0 380,082 + ABZR87_RS17940 0.21 +0.2 380,082 + ABZR87_RS17940 0.21 +1.1 380,083 - ABZR87_RS17940 0.22 -0.9 380,083 - ABZR87_RS17940 0.22 +0.0 380,083 - ABZR87_RS17940 0.22 +0.1 380,083 - ABZR87_RS17940 0.22 -2.0 380,083 - ABZR87_RS17940 0.22 -0.6 380,083 - ABZR87_RS17940 0.22 -1.2 380,083 - ABZR87_RS17940 0.22 +0.5 380,083 - ABZR87_RS17940 0.22 -0.5 380,083 - ABZR87_RS17940 0.22 -1.9 380,088 + ABZR87_RS17940 0.23 -1.2 380,088 + ABZR87_RS17940 0.23 -0.6 380,088 + ABZR87_RS17940 0.23 -0.5 380,088 + ABZR87_RS17940 0.23 -0.1 380,088 + ABZR87_RS17940 0.23 -0.6 380,088 + ABZR87_RS17940 0.23 -0.7 380,088 + ABZR87_RS17940 0.23 +1.8 380,088 + ABZR87_RS17940 0.23 +0.6 380,089 - ABZR87_RS17940 0.23 +0.8 380,089 - ABZR87_RS17940 0.23 -0.6 380,089 - ABZR87_RS17940 0.23 -0.4 380,089 - ABZR87_RS17940 0.23 -2.3 380,089 - ABZR87_RS17940 0.23 -0.3 380,089 - ABZR87_RS17940 0.23 +0.3 380,089 - ABZR87_RS17940 0.23 -0.6 380,212 + ABZR87_RS17940 0.56 -0.6 380,212 + ABZR87_RS17940 0.56 +0.6 380,213 - ABZR87_RS17940 0.56 +0.2 380,213 - ABZR87_RS17940 0.56 -0.8 380,213 - ABZR87_RS17940 0.56 -0.1 380,371 - -0.4 380,433 + +0.2 380,445 + +0.6 380,445 + +1.6 380,445 + +0.3 380,446 - -1.1 380,446 - -1.8 380,446 - -2.5 380,486 + -1.1 380,486 + -0.7 380,487 - -0.9 380,500 + -1.3 380,501 - -0.9 380,533 + -0.2 380,533 + -1.7 380,533 + -0.2 380,533 + -0.8 380,533 + -0.1 380,533 + -2.2 380,534 - -2.8 380,534 - -0.8 380,704 + ABZR87_RS17945 0.26 -2.5 380,704 + ABZR87_RS17945 0.26 -0.9 380,704 + ABZR87_RS17945 0.26 -1.5 380,704 + ABZR87_RS17945 0.26 -2.8 380,704 + ABZR87_RS17945 0.26 +0.2 380,704 + ABZR87_RS17945 0.26 -0.0 380,705 - ABZR87_RS17945 0.26 -0.6 380,705 - ABZR87_RS17945 0.26 -0.5 380,705 - ABZR87_RS17945 0.26 -0.4 380,705 - ABZR87_RS17945 0.26 -2.4 380,705 - ABZR87_RS17945 0.26 -0.7 380,705 - ABZR87_RS17945 0.26 -1.8 380,705 - ABZR87_RS17945 0.26 -2.1 380,706 + ABZR87_RS17945 0.26 -1.0 380,706 + ABZR87_RS17945 0.26 -1.5 380,707 - ABZR87_RS17945 0.26 -2.7 380,707 - ABZR87_RS17945 0.26 +0.0 380,707 - ABZR87_RS17945 0.26 -0.6 380,707 - ABZR87_RS17945 0.26 -0.8 380,728 + ABZR87_RS17945 0.29 -0.7 380,728 + ABZR87_RS17945 0.29 -1.1 380,728 + ABZR87_RS17945 0.29 -1.5 380,728 + ABZR87_RS17945 0.29 -2.1 380,728 + ABZR87_RS17945 0.29 -1.0 380,729 - ABZR87_RS17945 0.29 -0.5 380,729 - ABZR87_RS17945 0.29 -0.9 380,818 + ABZR87_RS17945 0.39 -0.8 380,818 + ABZR87_RS17945 0.39 -0.5 380,818 + ABZR87_RS17945 0.39 -0.6 380,818 + ABZR87_RS17945 0.39 -0.3 380,819 - ABZR87_RS17945 0.39 -0.6 380,819 - ABZR87_RS17945 0.39 -1.3 380,867 - ABZR87_RS17945 0.45 -1.1 381,105 + ABZR87_RS17945 0.72 +0.6 381,235 + ABZR87_RS17945 0.87 +0.8 381,355 + +0.2 381,355 + +0.4 381,356 - -2.1 381,356 - -1.7 381,390 - +1.8 381,513 - -1.2 381,605 + ABZR87_RS17950 0.19 +1.1 381,606 - ABZR87_RS17950 0.19 -1.4 381,606 - ABZR87_RS17950 0.19 -1.6 381,606 - ABZR87_RS17950 0.19 -2.7 381,947 + ABZR87_RS17950 0.55 +0.4 381,947 + ABZR87_RS17950 0.55 -1.6 381,948 - ABZR87_RS17950 0.55 -0.7 381,948 - ABZR87_RS17950 0.55 -1.7 381,948 - ABZR87_RS17950 0.55 -1.7 381,948 - ABZR87_RS17950 0.55 -0.5 381,948 - ABZR87_RS17950 0.55 -1.7 381,948 - ABZR87_RS17950 0.55 -0.5 381,949 + ABZR87_RS17950 0.56 +0.3 382,037 + ABZR87_RS17950 0.65 +1.3 382,190 + ABZR87_RS17950 0.81 +1.3 382,190 + ABZR87_RS17950 0.81 +0.7 382,190 + ABZR87_RS17950 0.81 +0.2 382,190 + ABZR87_RS17950 0.81 +0.3 382,190 + ABZR87_RS17950 0.81 -1.8 382,191 - ABZR87_RS17950 0.81 -1.3 382,191 - ABZR87_RS17950 0.81 -1.4 382,191 - ABZR87_RS17950 0.81 -0.5
Or see this region's nucleotide sequence