Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17445 and ABZR87_RS17450 are separated by 8 nucleotides ABZR87_RS17450 and ABZR87_RS17455 overlap by 25 nucleotides ABZR87_RS17455 and ABZR87_RS17460 are separated by 171 nucleotides
ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956
_RS17445
ABZR87_RS17450: ABZR87_RS17450 - LysR family transcriptional regulator, at 273,965 to 274,894
_RS17450
ABZR87_RS17455: ABZR87_RS17455 - AraC family transcriptional regulator, at 274,870 to 275,886
_RS17455
ABZR87_RS17460: ABZR87_RS17460 - acyl-CoA dehydrogenase, at 276,058 to 277,191
_RS17460
Position (kb) 274
275
276 Strain fitness (log2 ratio) -1
0
1
2 at 273.955 kb on - strand at 273.961 kb on + strand at 273.961 kb on + strand at 273.962 kb on - strand at 273.987 kb on - strand at 274.042 kb on + strand at 274.043 kb on - strand at 274.129 kb on - strand, within ABZR87_RS17450 at 274.587 kb on + strand, within ABZR87_RS17450 at 274.587 kb on + strand, within ABZR87_RS17450 at 274.587 kb on + strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.766 kb on + strand, within ABZR87_RS17450 at 274.767 kb on - strand, within ABZR87_RS17450 at 274.767 kb on - strand, within ABZR87_RS17450 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.109 kb on + strand, within ABZR87_RS17455 at 275.201 kb on + strand, within ABZR87_RS17455 at 275.398 kb on - strand, within ABZR87_RS17455 at 275.438 kb on + strand, within ABZR87_RS17455 at 275.439 kb on - strand, within ABZR87_RS17455 at 275.439 kb on - strand, within ABZR87_RS17455 at 275.727 kb on - strand, within ABZR87_RS17455 at 275.953 kb on - strand at 275.953 kb on - strand at 275.997 kb on + strand at 275.998 kb on - strand at 275.998 kb on - strand at 276.070 kb on + strand at 276.070 kb on + strand at 276.071 kb on - strand at 276.245 kb on - strand, within ABZR87_RS17460 at 276.245 kb on - strand, within ABZR87_RS17460 at 276.254 kb on - strand, within ABZR87_RS17460 at 276.263 kb on - strand, within ABZR87_RS17460 at 276.263 kb on - strand, within ABZR87_RS17460 at 276.386 kb on - strand, within ABZR87_RS17460 at 276.386 kb on - strand, within ABZR87_RS17460 at 276.848 kb on - strand, within ABZR87_RS17460
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 273,955 - +0.1 273,961 + +1.6 273,961 + -0.8 273,962 - +0.5 273,987 - +1.8 274,042 + +0.6 274,043 - -0.7 274,129 - ABZR87_RS17450 0.18 +0.3 274,587 + ABZR87_RS17450 0.67 -0.5 274,587 + ABZR87_RS17450 0.67 -0.3 274,587 + ABZR87_RS17450 0.67 +1.5 274,588 - ABZR87_RS17450 0.67 +0.5 274,588 - ABZR87_RS17450 0.67 +0.7 274,588 - ABZR87_RS17450 0.67 -1.0 274,588 - ABZR87_RS17450 0.67 +0.3 274,588 - ABZR87_RS17450 0.67 -0.3 274,588 - ABZR87_RS17450 0.67 +0.1 274,766 + ABZR87_RS17450 0.86 -0.4 274,767 - ABZR87_RS17450 0.86 -1.1 274,767 - ABZR87_RS17450 0.86 -0.8 275,051 + ABZR87_RS17455 0.18 +0.6 275,051 + ABZR87_RS17455 0.18 +0.6 275,051 + ABZR87_RS17455 0.18 -0.8 275,051 + ABZR87_RS17455 0.18 +0.7 275,051 + ABZR87_RS17455 0.18 -0.3 275,051 + ABZR87_RS17455 0.18 +1.2 275,109 + ABZR87_RS17455 0.24 +0.2 275,201 + ABZR87_RS17455 0.33 -0.1 275,398 - ABZR87_RS17455 0.52 +1.7 275,438 + ABZR87_RS17455 0.56 +0.1 275,439 - ABZR87_RS17455 0.56 +1.2 275,439 - ABZR87_RS17455 0.56 +0.3 275,727 - ABZR87_RS17455 0.84 +0.8 275,953 - -0.2 275,953 - -0.5 275,997 + +0.5 275,998 - +0.1 275,998 - -0.7 276,070 + -0.1 276,070 + -1.4 276,071 - -0.2 276,245 - ABZR87_RS17460 0.16 -0.9 276,245 - ABZR87_RS17460 0.16 +0.5 276,254 - ABZR87_RS17460 0.17 +0.9 276,263 - ABZR87_RS17460 0.18 +0.5 276,263 - ABZR87_RS17460 0.18 -0.3 276,386 - ABZR87_RS17460 0.29 -0.3 276,386 - ABZR87_RS17460 0.29 -0.8 276,848 - ABZR87_RS17460 0.70 -1.1
Or see this region's nucleotide sequence