Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16570 and ABZR87_RS16575 are separated by 46 nucleotides ABZR87_RS16575 and ABZR87_RS16580 are separated by 2 nucleotides ABZR87_RS16580 and ABZR87_RS16585 overlap by 17 nucleotides ABZR87_RS16585 and ABZR87_RS16590 are separated by 63 nucleotides
ABZR87_RS16570: ABZR87_RS16570 - VOC family protein, at 66,618 to 67,469
_RS16570
ABZR87_RS16575: ABZR87_RS16575 - ABC transporter ATP-binding protein, at 67,516 to 68,268
_RS16575
ABZR87_RS16580: ABZR87_RS16580 - ABC transporter ATP-binding protein, at 68,271 to 69,125
_RS16580
ABZR87_RS16585: ABZR87_RS16585 - OsmC family protein, at 69,109 to 69,699
_RS16585
ABZR87_RS16590: ABZR87_RS16590 - ABC transporter permease, at 69,763 to 71,601
_RS16590
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 67.315 kb on + strand, within ABZR87_RS16570 at 67.315 kb on + strand, within ABZR87_RS16570 at 67.405 kb on + strand at 67.405 kb on + strand at 67.406 kb on - strand at 67.539 kb on - strand at 67.539 kb on - strand at 67.539 kb on - strand at 67.596 kb on + strand, within ABZR87_RS16575 at 67.597 kb on - strand, within ABZR87_RS16575 at 67.597 kb on - strand, within ABZR87_RS16575 at 67.597 kb on - strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.616 kb on + strand, within ABZR87_RS16575 at 67.617 kb on - strand, within ABZR87_RS16575 at 67.724 kb on + strand, within ABZR87_RS16575 at 67.725 kb on - strand, within ABZR87_RS16575 at 67.889 kb on + strand, within ABZR87_RS16575 at 67.889 kb on + strand, within ABZR87_RS16575 at 67.889 kb on + strand, within ABZR87_RS16575 at 68.101 kb on - strand, within ABZR87_RS16575 at 68.101 kb on - strand, within ABZR87_RS16575 at 68.101 kb on - strand, within ABZR87_RS16575 at 68.208 kb on - strand at 68.338 kb on + strand at 68.338 kb on + strand at 68.338 kb on + strand at 68.339 kb on - strand at 68.620 kb on + strand, within ABZR87_RS16580 at 68.620 kb on + strand, within ABZR87_RS16580 at 68.632 kb on + strand, within ABZR87_RS16580 at 68.632 kb on + strand, within ABZR87_RS16580 at 68.632 kb on + strand, within ABZR87_RS16580 at 68.633 kb on - strand, within ABZR87_RS16580 at 69.046 kb on - strand at 69.243 kb on + strand, within ABZR87_RS16585 at 69.329 kb on + strand, within ABZR87_RS16585 at 69.330 kb on - strand, within ABZR87_RS16585 at 69.330 kb on - strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.444 kb on + strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.445 kb on - strand, within ABZR87_RS16585 at 69.506 kb on + strand, within ABZR87_RS16585 at 69.507 kb on - strand, within ABZR87_RS16585 at 69.559 kb on + strand, within ABZR87_RS16585 at 69.656 kb on - strand at 69.681 kb on - strand at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.986 kb on + strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.987 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 69.993 kb on - strand, within ABZR87_RS16590 at 70.061 kb on + strand, within ABZR87_RS16590 at 70.062 kb on - strand, within ABZR87_RS16590
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 67,315 + ABZR87_RS16570 0.82 +2.8 67,315 + ABZR87_RS16570 0.82 +1.0 67,405 + +0.2 67,405 + -0.5 67,406 - -0.7 67,539 - -0.1 67,539 - -0.5 67,539 - -0.4 67,596 + ABZR87_RS16575 0.11 -0.3 67,597 - ABZR87_RS16575 0.11 -0.2 67,597 - ABZR87_RS16575 0.11 +0.1 67,597 - ABZR87_RS16575 0.11 +0.0 67,616 + ABZR87_RS16575 0.13 -0.1 67,616 + ABZR87_RS16575 0.13 +1.8 67,616 + ABZR87_RS16575 0.13 +0.7 67,616 + ABZR87_RS16575 0.13 -1.6 67,617 - ABZR87_RS16575 0.13 -0.2 67,724 + ABZR87_RS16575 0.28 +0.8 67,725 - ABZR87_RS16575 0.28 +0.2 67,889 + ABZR87_RS16575 0.50 -0.2 67,889 + ABZR87_RS16575 0.50 -0.1 67,889 + ABZR87_RS16575 0.50 -0.0 68,101 - ABZR87_RS16575 0.78 +0.1 68,101 - ABZR87_RS16575 0.78 +0.7 68,101 - ABZR87_RS16575 0.78 -0.2 68,208 - -0.7 68,338 + -1.2 68,338 + +0.4 68,338 + -0.6 68,339 - +0.3 68,620 + ABZR87_RS16580 0.41 -0.6 68,620 + ABZR87_RS16580 0.41 -1.8 68,632 + ABZR87_RS16580 0.42 -0.7 68,632 + ABZR87_RS16580 0.42 -0.5 68,632 + ABZR87_RS16580 0.42 -0.4 68,633 - ABZR87_RS16580 0.42 -0.5 69,046 - +0.2 69,243 + ABZR87_RS16585 0.23 +0.2 69,329 + ABZR87_RS16585 0.37 -0.0 69,330 - ABZR87_RS16585 0.37 -0.8 69,330 - ABZR87_RS16585 0.37 +0.9 69,444 + ABZR87_RS16585 0.57 +0.6 69,444 + ABZR87_RS16585 0.57 -0.7 69,444 + ABZR87_RS16585 0.57 -0.0 69,444 + ABZR87_RS16585 0.57 +0.7 69,445 - ABZR87_RS16585 0.57 +1.2 69,445 - ABZR87_RS16585 0.57 -0.4 69,445 - ABZR87_RS16585 0.57 -0.3 69,506 + ABZR87_RS16585 0.67 -0.2 69,507 - ABZR87_RS16585 0.67 -0.7 69,559 + ABZR87_RS16585 0.76 -0.0 69,656 - -1.1 69,681 - -1.4 69,986 + ABZR87_RS16590 0.12 -0.3 69,986 + ABZR87_RS16590 0.12 +0.8 69,986 + ABZR87_RS16590 0.12 -1.1 69,986 + ABZR87_RS16590 0.12 +0.0 69,986 + ABZR87_RS16590 0.12 -0.5 69,987 - ABZR87_RS16590 0.12 -0.9 69,987 - ABZR87_RS16590 0.12 +0.1 69,987 - ABZR87_RS16590 0.12 -0.5 69,987 - ABZR87_RS16590 0.12 -0.7 69,993 - ABZR87_RS16590 0.13 -0.5 69,993 - ABZR87_RS16590 0.13 +0.1 69,993 - ABZR87_RS16590 0.13 +0.0 70,061 + ABZR87_RS16590 0.16 -1.1 70,062 - ABZR87_RS16590 0.16 +0.4
Or see this region's nucleotide sequence