Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15695 and ABZR87_RS15700 overlap by 10 nucleotides ABZR87_RS15700 and ABZR87_RS15705 are separated by 25 nucleotides ABZR87_RS15705 and ABZR87_RS15710 are separated by 150 nucleotides
ABZR87_RS15695: ABZR87_RS15695 - homoserine kinase, at 3,311,665 to 3,312,669
_RS15695
ABZR87_RS15700: ABZR87_RS15700 - BPSS1780 family membrane protein, at 3,312,660 to 3,313,457
_RS15700
ABZR87_RS15705: ABZR87_RS15705 - UvrD-helicase domain-containing protein, at 3,313,483 to 3,315,843
_RS15705
ABZR87_RS15710: ABZR87_RS15710 - valine--tRNA ligase, at 3,315,994 to 3,318,870
_RS15710
Position (kb)
3313
3314
3315
3316 Strain fitness (log2 ratio)
-1
0
1
2 at 3312.676 kb on + strand at 3312.693 kb on + strand at 3312.693 kb on + strand at 3312.693 kb on + strand at 3312.694 kb on - strand at 3312.694 kb on - strand at 3312.766 kb on - strand, within ABZR87_RS15700 at 3312.766 kb on - strand, within ABZR87_RS15700 at 3312.876 kb on - strand, within ABZR87_RS15700 at 3312.930 kb on + strand, within ABZR87_RS15700 at 3312.975 kb on + strand, within ABZR87_RS15700 at 3312.975 kb on + strand, within ABZR87_RS15700 at 3312.975 kb on + strand, within ABZR87_RS15700 at 3312.975 kb on + strand, within ABZR87_RS15700 at 3312.975 kb on + strand, within ABZR87_RS15700 at 3312.975 kb on + strand, within ABZR87_RS15700 at 3312.976 kb on - strand, within ABZR87_RS15700 at 3312.976 kb on - strand, within ABZR87_RS15700 at 3313.089 kb on + strand, within ABZR87_RS15700 at 3313.119 kb on + strand, within ABZR87_RS15700 at 3313.119 kb on + strand, within ABZR87_RS15700 at 3313.119 kb on + strand, within ABZR87_RS15700 at 3313.119 kb on + strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.120 kb on - strand, within ABZR87_RS15700 at 3313.121 kb on + strand, within ABZR87_RS15700 at 3313.122 kb on - strand, within ABZR87_RS15700 at 3313.246 kb on - strand, within ABZR87_RS15700 at 3313.351 kb on - strand, within ABZR87_RS15700 at 3313.377 kb on + strand, within ABZR87_RS15700 at 3313.377 kb on + strand, within ABZR87_RS15700 at 3313.377 kb on + strand, within ABZR87_RS15700 at 3313.378 kb on - strand at 3313.378 kb on - strand at 3313.378 kb on - strand at 3313.378 kb on - strand at 3313.390 kb on - strand at 3313.390 kb on - strand at 3313.399 kb on - strand at 3313.673 kb on + strand at 3313.673 kb on + strand at 3313.715 kb on + strand at 3313.715 kb on + strand at 3313.716 kb on - strand at 3313.716 kb on - strand at 3313.716 kb on - strand at 3313.792 kb on - strand, within ABZR87_RS15705 at 3313.919 kb on + strand, within ABZR87_RS15705 at 3313.952 kb on + strand, within ABZR87_RS15705 at 3313.952 kb on + strand, within ABZR87_RS15705 at 3313.953 kb on - strand, within ABZR87_RS15705 at 3314.372 kb on + strand, within ABZR87_RS15705 at 3314.654 kb on + strand, within ABZR87_RS15705 at 3314.714 kb on + strand, within ABZR87_RS15705 at 3315.075 kb on - strand, within ABZR87_RS15705 at 3315.075 kb on - strand, within ABZR87_RS15705 at 3315.164 kb on + strand, within ABZR87_RS15705 at 3315.180 kb on + strand, within ABZR87_RS15705 at 3315.225 kb on - strand, within ABZR87_RS15705 at 3315.264 kb on - strand, within ABZR87_RS15705 at 3315.323 kb on + strand, within ABZR87_RS15705 at 3315.923 kb on + strand at 3315.923 kb on + strand at 3315.925 kb on + strand at 3315.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 3,312,676 + -0.7 3,312,693 + -0.3 3,312,693 + -0.4 3,312,693 + +0.2 3,312,694 - -1.4 3,312,694 - +0.1 3,312,766 - ABZR87_RS15700 0.13 -0.1 3,312,766 - ABZR87_RS15700 0.13 +0.5 3,312,876 - ABZR87_RS15700 0.27 -0.1 3,312,930 + ABZR87_RS15700 0.34 +0.3 3,312,975 + ABZR87_RS15700 0.39 -0.7 3,312,975 + ABZR87_RS15700 0.39 +0.9 3,312,975 + ABZR87_RS15700 0.39 -0.0 3,312,975 + ABZR87_RS15700 0.39 +0.9 3,312,975 + ABZR87_RS15700 0.39 +0.6 3,312,975 + ABZR87_RS15700 0.39 +0.2 3,312,976 - ABZR87_RS15700 0.40 -1.2 3,312,976 - ABZR87_RS15700 0.40 +0.8 3,313,089 + ABZR87_RS15700 0.54 -0.1 3,313,119 + ABZR87_RS15700 0.58 +0.5 3,313,119 + ABZR87_RS15700 0.58 -0.6 3,313,119 + ABZR87_RS15700 0.58 +0.2 3,313,119 + ABZR87_RS15700 0.58 +0.3 3,313,120 - ABZR87_RS15700 0.58 +0.3 3,313,120 - ABZR87_RS15700 0.58 -1.2 3,313,120 - ABZR87_RS15700 0.58 +0.8 3,313,120 - ABZR87_RS15700 0.58 -0.4 3,313,120 - ABZR87_RS15700 0.58 -0.4 3,313,120 - ABZR87_RS15700 0.58 +0.0 3,313,120 - ABZR87_RS15700 0.58 -0.1 3,313,120 - ABZR87_RS15700 0.58 -0.2 3,313,120 - ABZR87_RS15700 0.58 -0.2 3,313,120 - ABZR87_RS15700 0.58 +0.0 3,313,121 + ABZR87_RS15700 0.58 +1.8 3,313,122 - ABZR87_RS15700 0.58 -0.2 3,313,246 - ABZR87_RS15700 0.73 +0.8 3,313,351 - ABZR87_RS15700 0.87 -0.2 3,313,377 + ABZR87_RS15700 0.90 -1.4 3,313,377 + ABZR87_RS15700 0.90 +2.0 3,313,377 + ABZR87_RS15700 0.90 -0.5 3,313,378 - -0.9 3,313,378 - -0.2 3,313,378 - -0.7 3,313,378 - -0.3 3,313,390 - +0.8 3,313,390 - +0.3 3,313,399 - -1.3 3,313,673 + +0.5 3,313,673 + -0.9 3,313,715 + -0.3 3,313,715 + +0.2 3,313,716 - -0.3 3,313,716 - -0.2 3,313,716 - -0.3 3,313,792 - ABZR87_RS15705 0.13 -1.7 3,313,919 + ABZR87_RS15705 0.18 -1.5 3,313,952 + ABZR87_RS15705 0.20 -0.5 3,313,952 + ABZR87_RS15705 0.20 -0.7 3,313,953 - ABZR87_RS15705 0.20 +1.8 3,314,372 + ABZR87_RS15705 0.38 -0.2 3,314,654 + ABZR87_RS15705 0.50 -1.6 3,314,714 + ABZR87_RS15705 0.52 -0.2 3,315,075 - ABZR87_RS15705 0.67 +1.8 3,315,075 - ABZR87_RS15705 0.67 +0.3 3,315,164 + ABZR87_RS15705 0.71 +0.3 3,315,180 + ABZR87_RS15705 0.72 +0.3 3,315,225 - ABZR87_RS15705 0.74 -0.5 3,315,264 - ABZR87_RS15705 0.75 -1.5 3,315,323 + ABZR87_RS15705 0.78 -0.5 3,315,923 + +0.8 3,315,923 + +0.4 3,315,925 + +0.5 3,315,925 + -0.3
Or see this region's nucleotide sequence