Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14945 and ABZR87_RS14950 are separated by 75 nucleotides ABZR87_RS14950 and ABZR87_RS14955 overlap by 1 nucleotides
ABZR87_RS14945: ABZR87_RS14945 - ketol-acid reductoisomerase, at 3,153,079 to 3,154,095
_RS14945
ABZR87_RS14950: ABZR87_RS14950 - acetolactate synthase small subunit, at 3,154,171 to 3,154,662
_RS14950
ABZR87_RS14955: ABZR87_RS14955 - acetolactate synthase 3 catalytic subunit, at 3,154,662 to 3,156,419
_RS14955
Position (kb)
3154
3155 Strain fitness (log2 ratio)
-2
-1
0
1 at 3154.117 kb on + strand at 3154.304 kb on + strand, within ABZR87_RS14950 at 3154.304 kb on + strand, within ABZR87_RS14950 at 3154.305 kb on - strand, within ABZR87_RS14950 at 3154.580 kb on + strand, within ABZR87_RS14950 at 3154.580 kb on + strand, within ABZR87_RS14950 at 3154.647 kb on - strand at 3154.663 kb on + strand at 3154.664 kb on - strand at 3154.846 kb on + strand, within ABZR87_RS14955 at 3154.888 kb on + strand, within ABZR87_RS14955 at 3154.888 kb on + strand, within ABZR87_RS14955 at 3154.888 kb on + strand, within ABZR87_RS14955 at 3154.888 kb on + strand, within ABZR87_RS14955 at 3154.889 kb on - strand, within ABZR87_RS14955 at 3154.987 kb on + strand, within ABZR87_RS14955 at 3154.987 kb on + strand, within ABZR87_RS14955 at 3154.987 kb on + strand, within ABZR87_RS14955 at 3154.988 kb on - strand, within ABZR87_RS14955 at 3154.988 kb on - strand, within ABZR87_RS14955 at 3155.161 kb on + strand, within ABZR87_RS14955 at 3155.284 kb on + strand, within ABZR87_RS14955 at 3155.284 kb on + strand, within ABZR87_RS14955 at 3155.284 kb on + strand, within ABZR87_RS14955 at 3155.285 kb on - strand, within ABZR87_RS14955 at 3155.590 kb on + strand, within ABZR87_RS14955 at 3155.590 kb on + strand, within ABZR87_RS14955 at 3155.591 kb on - strand, within ABZR87_RS14955
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 3,154,117 + -0.2 3,154,304 + ABZR87_RS14950 0.27 +0.9 3,154,304 + ABZR87_RS14950 0.27 -1.2 3,154,305 - ABZR87_RS14950 0.27 -1.8 3,154,580 + ABZR87_RS14950 0.83 -2.1 3,154,580 + ABZR87_RS14950 0.83 -1.3 3,154,647 - -0.7 3,154,663 + -2.0 3,154,664 - +0.7 3,154,846 + ABZR87_RS14955 0.10 -1.0 3,154,888 + ABZR87_RS14955 0.13 +1.4 3,154,888 + ABZR87_RS14955 0.13 -0.8 3,154,888 + ABZR87_RS14955 0.13 -1.5 3,154,888 + ABZR87_RS14955 0.13 +0.2 3,154,889 - ABZR87_RS14955 0.13 +1.2 3,154,987 + ABZR87_RS14955 0.18 -0.2 3,154,987 + ABZR87_RS14955 0.18 -0.5 3,154,987 + ABZR87_RS14955 0.18 -1.0 3,154,988 - ABZR87_RS14955 0.19 -1.2 3,154,988 - ABZR87_RS14955 0.19 +0.1 3,155,161 + ABZR87_RS14955 0.28 -1.0 3,155,284 + ABZR87_RS14955 0.35 -1.3 3,155,284 + ABZR87_RS14955 0.35 -1.2 3,155,284 + ABZR87_RS14955 0.35 -0.1 3,155,285 - ABZR87_RS14955 0.35 +1.2 3,155,590 + ABZR87_RS14955 0.53 +0.8 3,155,590 + ABZR87_RS14955 0.53 -0.3 3,155,591 - ABZR87_RS14955 0.53 -1.5
Or see this region's nucleotide sequence