Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13035 and ABZR87_RS13040 are separated by 29 nucleotides ABZR87_RS13040 and ABZR87_RS13045 are separated by 54 nucleotides ABZR87_RS13045 and ABZR87_RS13050 overlap by 4 nucleotides ABZR87_RS13050 and ABZR87_RS13055 overlap by 4 nucleotides
ABZR87_RS13035: ABZR87_RS13035 - phage tail sheath protein, at 2,767,719 to 2,768,894
_RS13035
ABZR87_RS13040: ABZR87_RS13040 - phage major tail tube protein, at 2,768,924 to 2,769,433
_RS13040
ABZR87_RS13045: ABZR87_RS13045 - phage tail assembly protein, at 2,769,488 to 2,769,814
_RS13045
ABZR87_RS13050: ABZR87_RS13050 - GpE family phage tail protein, at 2,769,811 to 2,769,912
_RS13050
ABZR87_RS13055: ABZR87_RS13055 - hypothetical protein, at 2,769,909 to 2,772,548
_RS13055
Position (kb)
2769
2770 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2768.857 kb on - strand at 2768.912 kb on + strand at 2769.035 kb on + strand, within ABZR87_RS13040 at 2769.107 kb on + strand, within ABZR87_RS13040 at 2769.107 kb on + strand, within ABZR87_RS13040 at 2769.107 kb on + strand, within ABZR87_RS13040 at 2769.107 kb on + strand, within ABZR87_RS13040 at 2769.107 kb on + strand, within ABZR87_RS13040 at 2769.108 kb on - strand, within ABZR87_RS13040 at 2769.108 kb on - strand, within ABZR87_RS13040 at 2769.108 kb on - strand, within ABZR87_RS13040 at 2769.108 kb on - strand, within ABZR87_RS13040 at 2769.108 kb on - strand, within ABZR87_RS13040 at 2769.189 kb on - strand, within ABZR87_RS13040 at 2769.318 kb on - strand, within ABZR87_RS13040 at 2769.320 kb on + strand, within ABZR87_RS13040 at 2769.320 kb on + strand, within ABZR87_RS13040 at 2769.321 kb on - strand, within ABZR87_RS13040 at 2769.321 kb on - strand, within ABZR87_RS13040 at 2769.442 kb on + strand at 2769.588 kb on + strand, within ABZR87_RS13045 at 2769.589 kb on - strand, within ABZR87_RS13045 at 2769.589 kb on - strand, within ABZR87_RS13045 at 2769.589 kb on - strand, within ABZR87_RS13045 at 2769.640 kb on + strand, within ABZR87_RS13045 at 2769.640 kb on + strand, within ABZR87_RS13045 at 2769.640 kb on + strand, within ABZR87_RS13045 at 2769.641 kb on - strand, within ABZR87_RS13045 at 2769.841 kb on + strand, within ABZR87_RS13050 at 2770.339 kb on + strand, within ABZR87_RS13055 at 2770.340 kb on - strand, within ABZR87_RS13055 at 2770.503 kb on - strand, within ABZR87_RS13055 at 2770.647 kb on + strand, within ABZR87_RS13055 at 2770.647 kb on + strand, within ABZR87_RS13055
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,768,857 - +0.2 2,768,912 + +0.1 2,769,035 + ABZR87_RS13040 0.22 +0.5 2,769,107 + ABZR87_RS13040 0.36 +0.5 2,769,107 + ABZR87_RS13040 0.36 -0.7 2,769,107 + ABZR87_RS13040 0.36 -0.7 2,769,107 + ABZR87_RS13040 0.36 +0.9 2,769,107 + ABZR87_RS13040 0.36 -0.1 2,769,108 - ABZR87_RS13040 0.36 +0.9 2,769,108 - ABZR87_RS13040 0.36 +0.4 2,769,108 - ABZR87_RS13040 0.36 +0.0 2,769,108 - ABZR87_RS13040 0.36 +0.1 2,769,108 - ABZR87_RS13040 0.36 +1.2 2,769,189 - ABZR87_RS13040 0.52 +0.5 2,769,318 - ABZR87_RS13040 0.77 -0.8 2,769,320 + ABZR87_RS13040 0.78 +0.2 2,769,320 + ABZR87_RS13040 0.78 +1.3 2,769,321 - ABZR87_RS13040 0.78 +0.5 2,769,321 - ABZR87_RS13040 0.78 -0.2 2,769,442 + +1.1 2,769,588 + ABZR87_RS13045 0.31 -1.5 2,769,589 - ABZR87_RS13045 0.31 -0.5 2,769,589 - ABZR87_RS13045 0.31 +3.1 2,769,589 - ABZR87_RS13045 0.31 -0.9 2,769,640 + ABZR87_RS13045 0.46 -0.1 2,769,640 + ABZR87_RS13045 0.46 -0.4 2,769,640 + ABZR87_RS13045 0.46 +2.2 2,769,641 - ABZR87_RS13045 0.47 -0.8 2,769,841 + ABZR87_RS13050 0.29 -0.7 2,770,339 + ABZR87_RS13055 0.16 +1.4 2,770,340 - ABZR87_RS13055 0.16 +0.5 2,770,503 - ABZR87_RS13055 0.23 -0.2 2,770,647 + ABZR87_RS13055 0.28 +1.0 2,770,647 + ABZR87_RS13055 0.28 +0.3
Or see this region's nucleotide sequence