Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11930 and ABZR87_RS11935 are separated by 49 nucleotides ABZR87_RS11935 and ABZR87_RS11940 are separated by 21 nucleotides ABZR87_RS11940 and ABZR87_RS11945 are separated by 125 nucleotides ABZR87_RS11945 and ABZR87_RS11950 overlap by 14 nucleotides ABZR87_RS11950 and ABZR87_RS11955 are separated by 9 nucleotides
ABZR87_RS11930: ABZR87_RS11930 - NfeD family protein, at 2,535,459 to 2,535,884
_RS11930
ABZR87_RS11935: ABZR87_RS11935 - SPFH domain-containing protein, at 2,535,934 to 2,536,860
_RS11935
ABZR87_RS11940: ABZR87_RS11940 - SsrA-binding protein SmpB, at 2,536,882 to 2,537,328
_RS11940
ABZR87_RS11945: ABZR87_RS11945 - type II toxin-antitoxin system RatA family toxin, at 2,537,454 to 2,537,891
_RS11945
ABZR87_RS11950: ABZR87_RS11950 - RnfH family protein, at 2,537,878 to 2,538,243
_RS11950
ABZR87_RS11955: ABZR87_RS11955 - DUF4124 domain-containing protein, at 2,538,253 to 2,538,792
_RS11955
Position (kb)
2536
2537
2538 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2535.883 kb on - strand at 2535.912 kb on + strand at 2535.912 kb on + strand at 2535.912 kb on + strand at 2535.912 kb on + strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.913 kb on - strand at 2535.933 kb on + strand at 2535.933 kb on + strand at 2535.933 kb on + strand at 2535.933 kb on + strand at 2535.933 kb on + strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2535.934 kb on - strand at 2536.051 kb on + strand, within ABZR87_RS11935 at 2536.052 kb on - strand, within ABZR87_RS11935 at 2536.052 kb on - strand, within ABZR87_RS11935 at 2536.111 kb on + strand, within ABZR87_RS11935 at 2536.111 kb on + strand, within ABZR87_RS11935 at 2536.111 kb on + strand, within ABZR87_RS11935 at 2536.111 kb on + strand, within ABZR87_RS11935 at 2536.111 kb on + strand, within ABZR87_RS11935 at 2536.111 kb on + strand, within ABZR87_RS11935 at 2536.161 kb on + strand, within ABZR87_RS11935 at 2536.161 kb on + strand, within ABZR87_RS11935 at 2536.161 kb on + strand, within ABZR87_RS11935 at 2536.161 kb on + strand, within ABZR87_RS11935 at 2536.162 kb on - strand, within ABZR87_RS11935 at 2536.162 kb on - strand, within ABZR87_RS11935 at 2536.162 kb on - strand, within ABZR87_RS11935 at 2536.204 kb on + strand, within ABZR87_RS11935 at 2536.205 kb on - strand, within ABZR87_RS11935 at 2536.205 kb on - strand, within ABZR87_RS11935 at 2536.205 kb on - strand, within ABZR87_RS11935 at 2536.237 kb on + strand, within ABZR87_RS11935 at 2536.237 kb on + strand, within ABZR87_RS11935 at 2536.238 kb on - strand, within ABZR87_RS11935 at 2536.238 kb on - strand, within ABZR87_RS11935 at 2536.411 kb on + strand, within ABZR87_RS11935 at 2536.471 kb on - strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.732 kb on + strand, within ABZR87_RS11935 at 2536.733 kb on - strand, within ABZR87_RS11935 at 2536.733 kb on - strand, within ABZR87_RS11935 at 2536.733 kb on - strand, within ABZR87_RS11935 at 2536.733 kb on - strand, within ABZR87_RS11935 at 2536.733 kb on - strand, within ABZR87_RS11935 at 2536.859 kb on - strand at 2537.010 kb on - strand, within ABZR87_RS11940 at 2537.010 kb on - strand, within ABZR87_RS11940 at 2537.010 kb on - strand, within ABZR87_RS11940 at 2537.154 kb on + strand, within ABZR87_RS11940 at 2537.198 kb on + strand, within ABZR87_RS11940 at 2537.198 kb on + strand, within ABZR87_RS11940 at 2537.198 kb on + strand, within ABZR87_RS11940 at 2537.199 kb on - strand, within ABZR87_RS11940 at 2537.273 kb on + strand, within ABZR87_RS11940 at 2537.328 kb on + strand at 2537.328 kb on + strand at 2537.328 kb on + strand at 2537.328 kb on + strand at 2537.328 kb on + strand at 2537.328 kb on + strand at 2537.329 kb on - strand at 2537.329 kb on - strand at 2537.329 kb on - strand at 2537.329 kb on - strand at 2537.338 kb on + strand at 2537.339 kb on - strand at 2537.339 kb on - strand at 2537.383 kb on + strand at 2537.383 kb on + strand at 2537.398 kb on - strand at 2537.878 kb on - strand at 2537.878 kb on - strand at 2537.878 kb on - strand at 2538.056 kb on - strand, within ABZR87_RS11950 at 2538.241 kb on + strand at 2538.242 kb on - strand at 2538.242 kb on - strand at 2538.242 kb on - strand at 2538.248 kb on + strand at 2538.249 kb on - strand at 2538.254 kb on + strand at 2538.321 kb on + strand, within ABZR87_RS11955 at 2538.321 kb on + strand, within ABZR87_RS11955 at 2538.322 kb on - strand, within ABZR87_RS11955 at 2538.322 kb on - strand, within ABZR87_RS11955 at 2538.322 kb on - strand, within ABZR87_RS11955 at 2538.322 kb on - strand, within ABZR87_RS11955 at 2538.323 kb on + strand, within ABZR87_RS11955 at 2538.323 kb on + strand, within ABZR87_RS11955 at 2538.323 kb on + strand, within ABZR87_RS11955 at 2538.323 kb on + strand, within ABZR87_RS11955 at 2538.324 kb on - strand, within ABZR87_RS11955 at 2538.324 kb on - strand, within ABZR87_RS11955
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,535,883 - +0.1 2,535,912 + -0.7 2,535,912 + +1.2 2,535,912 + +0.8 2,535,912 + -0.8 2,535,913 - +0.8 2,535,913 - +0.5 2,535,913 - -1.9 2,535,913 - +0.9 2,535,913 - +0.1 2,535,913 - +0.7 2,535,913 - +0.3 2,535,913 - +0.7 2,535,933 + -0.0 2,535,933 + -0.7 2,535,933 + +0.2 2,535,933 + +1.2 2,535,933 + -1.1 2,535,934 - +0.8 2,535,934 - +0.1 2,535,934 - -0.1 2,535,934 - +0.3 2,535,934 - -0.0 2,535,934 - -0.3 2,535,934 - -0.2 2,535,934 - +0.5 2,535,934 - +0.9 2,536,051 + ABZR87_RS11935 0.13 -0.1 2,536,052 - ABZR87_RS11935 0.13 -0.2 2,536,052 - ABZR87_RS11935 0.13 +0.7 2,536,111 + ABZR87_RS11935 0.19 -0.6 2,536,111 + ABZR87_RS11935 0.19 -1.2 2,536,111 + ABZR87_RS11935 0.19 -0.2 2,536,111 + ABZR87_RS11935 0.19 +0.7 2,536,111 + ABZR87_RS11935 0.19 +1.1 2,536,111 + ABZR87_RS11935 0.19 +0.6 2,536,161 + ABZR87_RS11935 0.24 -0.0 2,536,161 + ABZR87_RS11935 0.24 +0.7 2,536,161 + ABZR87_RS11935 0.24 -2.2 2,536,161 + ABZR87_RS11935 0.24 -0.2 2,536,162 - ABZR87_RS11935 0.25 +2.2 2,536,162 - ABZR87_RS11935 0.25 +0.5 2,536,162 - ABZR87_RS11935 0.25 +0.4 2,536,204 + ABZR87_RS11935 0.29 -0.9 2,536,205 - ABZR87_RS11935 0.29 +0.5 2,536,205 - ABZR87_RS11935 0.29 +0.3 2,536,205 - ABZR87_RS11935 0.29 -0.1 2,536,237 + ABZR87_RS11935 0.33 -0.5 2,536,237 + ABZR87_RS11935 0.33 -0.4 2,536,238 - ABZR87_RS11935 0.33 -0.8 2,536,238 - ABZR87_RS11935 0.33 +0.3 2,536,411 + ABZR87_RS11935 0.51 -0.2 2,536,471 - ABZR87_RS11935 0.58 +0.5 2,536,732 + ABZR87_RS11935 0.86 +1.4 2,536,732 + ABZR87_RS11935 0.86 -0.2 2,536,732 + ABZR87_RS11935 0.86 -0.0 2,536,732 + ABZR87_RS11935 0.86 +0.7 2,536,732 + ABZR87_RS11935 0.86 +0.1 2,536,732 + ABZR87_RS11935 0.86 +0.5 2,536,732 + ABZR87_RS11935 0.86 -0.3 2,536,733 - ABZR87_RS11935 0.86 -0.8 2,536,733 - ABZR87_RS11935 0.86 -0.0 2,536,733 - ABZR87_RS11935 0.86 -1.2 2,536,733 - ABZR87_RS11935 0.86 -0.2 2,536,733 - ABZR87_RS11935 0.86 +0.6 2,536,859 - -0.5 2,537,010 - ABZR87_RS11940 0.29 -1.0 2,537,010 - ABZR87_RS11940 0.29 -2.1 2,537,010 - ABZR87_RS11940 0.29 +0.0 2,537,154 + ABZR87_RS11940 0.61 -1.2 2,537,198 + ABZR87_RS11940 0.71 +0.2 2,537,198 + ABZR87_RS11940 0.71 +1.8 2,537,198 + ABZR87_RS11940 0.71 -2.1 2,537,199 - ABZR87_RS11940 0.71 -1.8 2,537,273 + ABZR87_RS11940 0.87 -0.5 2,537,328 + -1.6 2,537,328 + +0.2 2,537,328 + -0.6 2,537,328 + -0.2 2,537,328 + -0.0 2,537,328 + -0.8 2,537,329 - +0.5 2,537,329 - -2.0 2,537,329 - -0.2 2,537,329 - +0.5 2,537,338 + -1.5 2,537,339 - +0.2 2,537,339 - -0.2 2,537,383 + -2.3 2,537,383 + -1.6 2,537,398 - -0.2 2,537,878 - -0.3 2,537,878 - -0.3 2,537,878 - -0.4 2,538,056 - ABZR87_RS11950 0.49 -0.0 2,538,241 + +0.1 2,538,242 - +0.2 2,538,242 - +1.0 2,538,242 - +0.7 2,538,248 + -0.3 2,538,249 - +0.4 2,538,254 + -0.7 2,538,321 + ABZR87_RS11955 0.13 +0.5 2,538,321 + ABZR87_RS11955 0.13 +0.7 2,538,322 - ABZR87_RS11955 0.13 +0.7 2,538,322 - ABZR87_RS11955 0.13 +0.9 2,538,322 - ABZR87_RS11955 0.13 +0.4 2,538,322 - ABZR87_RS11955 0.13 +0.4 2,538,323 + ABZR87_RS11955 0.13 -0.0 2,538,323 + ABZR87_RS11955 0.13 +0.4 2,538,323 + ABZR87_RS11955 0.13 -2.6 2,538,323 + ABZR87_RS11955 0.13 -0.8 2,538,324 - ABZR87_RS11955 0.13 +0.1 2,538,324 - ABZR87_RS11955 0.13 +0.4
Or see this region's nucleotide sequence