Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11790

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11785 and ABZR87_RS11790 are separated by 0 nucleotidesABZR87_RS11790 and ABZR87_RS11795 are separated by 10 nucleotides ABZR87_RS11785: ABZR87_RS11785 - chromosome segregation protein SMC, at 2,497,171 to 2,500,686 _RS11785 ABZR87_RS11790: ABZR87_RS11790 - cell division protein ZipA C-terminal FtsZ-binding domain-containing protein, at 2,500,687 to 2,501,901 _RS11790 ABZR87_RS11795: ABZR87_RS11795 - NAD-dependent DNA ligase LigA, at 2,501,912 to 2,504,353 _RS11795 Position (kb) 2500 2501 2502Strain fitness (log2 ratio) -2 -1 0 1at 2500.756 kb on + strandat 2500.798 kb on + strandat 2500.798 kb on + strandat 2501.251 kb on + strand, within ABZR87_RS11790at 2501.441 kb on + strand, within ABZR87_RS11790at 2501.442 kb on - strand, within ABZR87_RS11790at 2501.491 kb on + strand, within ABZR87_RS11790at 2501.731 kb on + strand, within ABZR87_RS11790at 2501.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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2,500,756 + -0.9
2,500,798 + -1.8
2,500,798 + -1.0
2,501,251 + ABZR87_RS11790 0.46 -0.4
2,501,441 + ABZR87_RS11790 0.62 +0.0
2,501,442 - ABZR87_RS11790 0.62 -1.1
2,501,491 + ABZR87_RS11790 0.66 -1.8
2,501,731 + ABZR87_RS11790 0.86 -0.7
2,501,833 + -2.3

Or see this region's nucleotide sequence