Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10645 and ABZR87_RS10650 overlap by 16 nucleotides ABZR87_RS10650 and ABZR87_RS10655 are separated by 86 nucleotides
ABZR87_RS10645: ABZR87_RS10645 - cysteine--tRNA ligase, at 2,252,169 to 2,253,560
_RS10645
ABZR87_RS10650: ABZR87_RS10650 - DNA-3-methyladenine glycosylase, at 2,253,545 to 2,254,426
_RS10650
ABZR87_RS10655: ABZR87_RS10655 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,254,513 to 2,255,481
_RS10655
Position (kb)
2253
2254
2255 Strain fitness (log2 ratio)
-2
-1
0
1 at 2253.670 kb on - strand, within ABZR87_RS10650 at 2253.824 kb on + strand, within ABZR87_RS10650 at 2253.825 kb on - strand, within ABZR87_RS10650 at 2253.890 kb on + strand, within ABZR87_RS10650 at 2253.891 kb on - strand, within ABZR87_RS10650 at 2254.094 kb on + strand, within ABZR87_RS10650 at 2254.094 kb on + strand, within ABZR87_RS10650 at 2254.095 kb on - strand, within ABZR87_RS10650 at 2254.095 kb on - strand, within ABZR87_RS10650 at 2254.095 kb on - strand, within ABZR87_RS10650 at 2254.095 kb on - strand, within ABZR87_RS10650 at 2254.134 kb on + strand, within ABZR87_RS10650 at 2254.134 kb on + strand, within ABZR87_RS10650 at 2254.135 kb on - strand, within ABZR87_RS10650 at 2254.135 kb on - strand, within ABZR87_RS10650 at 2254.135 kb on - strand, within ABZR87_RS10650 at 2254.135 kb on - strand, within ABZR87_RS10650 at 2254.388 kb on + strand at 2254.388 kb on + strand at 2254.388 kb on + strand at 2254.389 kb on - strand at 2254.389 kb on - strand at 2254.390 kb on + strand at 2254.390 kb on + strand at 2254.390 kb on + strand at 2254.390 kb on + strand at 2254.390 kb on + strand at 2254.390 kb on + strand at 2254.391 kb on - strand at 2254.391 kb on - strand at 2254.404 kb on + strand at 2254.405 kb on - strand at 2254.421 kb on + strand at 2254.421 kb on + strand at 2254.421 kb on + strand at 2254.421 kb on + strand at 2254.421 kb on + strand at 2254.422 kb on - strand at 2254.422 kb on - strand at 2254.422 kb on - strand at 2254.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,253,670 - ABZR87_RS10650 0.14 -0.3 2,253,824 + ABZR87_RS10650 0.32 -0.1 2,253,825 - ABZR87_RS10650 0.32 -0.6 2,253,890 + ABZR87_RS10650 0.39 -1.5 2,253,891 - ABZR87_RS10650 0.39 -0.3 2,254,094 + ABZR87_RS10650 0.62 -0.7 2,254,094 + ABZR87_RS10650 0.62 -0.3 2,254,095 - ABZR87_RS10650 0.62 -1.2 2,254,095 - ABZR87_RS10650 0.62 -1.1 2,254,095 - ABZR87_RS10650 0.62 +0.3 2,254,095 - ABZR87_RS10650 0.62 -0.1 2,254,134 + ABZR87_RS10650 0.67 +0.8 2,254,134 + ABZR87_RS10650 0.67 -0.9 2,254,135 - ABZR87_RS10650 0.67 +0.3 2,254,135 - ABZR87_RS10650 0.67 -0.2 2,254,135 - ABZR87_RS10650 0.67 +0.8 2,254,135 - ABZR87_RS10650 0.67 -0.7 2,254,388 + -0.6 2,254,388 + -0.3 2,254,388 + +0.3 2,254,389 - -0.5 2,254,389 - -0.6 2,254,390 + +1.6 2,254,390 + +1.0 2,254,390 + -0.7 2,254,390 + -1.0 2,254,390 + -2.1 2,254,390 + -1.5 2,254,391 - +0.3 2,254,391 - -0.7 2,254,404 + -0.8 2,254,405 - +0.1 2,254,421 + +0.4 2,254,421 + -0.3 2,254,421 + -1.2 2,254,421 + +0.4 2,254,421 + -0.1 2,254,422 - +0.5 2,254,422 - +1.3 2,254,422 - -1.1 2,254,422 - -1.6
Or see this region's nucleotide sequence