Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10650

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10645 and ABZR87_RS10650 overlap by 16 nucleotidesABZR87_RS10650 and ABZR87_RS10655 are separated by 86 nucleotides ABZR87_RS10645: ABZR87_RS10645 - cysteine--tRNA ligase, at 2,252,169 to 2,253,560 _RS10645 ABZR87_RS10650: ABZR87_RS10650 - DNA-3-methyladenine glycosylase, at 2,253,545 to 2,254,426 _RS10650 ABZR87_RS10655: ABZR87_RS10655 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,254,513 to 2,255,481 _RS10655 Position (kb) 2253 2254 2255Strain fitness (log2 ratio) -2 -1 0 1at 2253.670 kb on - strand, within ABZR87_RS10650at 2253.824 kb on + strand, within ABZR87_RS10650at 2253.825 kb on - strand, within ABZR87_RS10650at 2253.890 kb on + strand, within ABZR87_RS10650at 2253.891 kb on - strand, within ABZR87_RS10650at 2254.094 kb on + strand, within ABZR87_RS10650at 2254.094 kb on + strand, within ABZR87_RS10650at 2254.095 kb on - strand, within ABZR87_RS10650at 2254.095 kb on - strand, within ABZR87_RS10650at 2254.095 kb on - strand, within ABZR87_RS10650at 2254.095 kb on - strand, within ABZR87_RS10650at 2254.134 kb on + strand, within ABZR87_RS10650at 2254.134 kb on + strand, within ABZR87_RS10650at 2254.135 kb on - strand, within ABZR87_RS10650at 2254.135 kb on - strand, within ABZR87_RS10650at 2254.135 kb on - strand, within ABZR87_RS10650at 2254.135 kb on - strand, within ABZR87_RS10650at 2254.388 kb on + strandat 2254.388 kb on + strandat 2254.388 kb on + strandat 2254.389 kb on - strandat 2254.389 kb on - strandat 2254.390 kb on + strandat 2254.390 kb on + strandat 2254.390 kb on + strandat 2254.390 kb on + strandat 2254.390 kb on + strandat 2254.390 kb on + strandat 2254.391 kb on - strandat 2254.391 kb on - strandat 2254.404 kb on + strandat 2254.405 kb on - strandat 2254.421 kb on + strandat 2254.421 kb on + strandat 2254.421 kb on + strandat 2254.421 kb on + strandat 2254.421 kb on + strandat 2254.422 kb on - strandat 2254.422 kb on - strandat 2254.422 kb on - strandat 2254.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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2,253,670 - ABZR87_RS10650 0.14 -0.3
2,253,824 + ABZR87_RS10650 0.32 -0.1
2,253,825 - ABZR87_RS10650 0.32 -0.6
2,253,890 + ABZR87_RS10650 0.39 -1.5
2,253,891 - ABZR87_RS10650 0.39 -0.3
2,254,094 + ABZR87_RS10650 0.62 -0.7
2,254,094 + ABZR87_RS10650 0.62 -0.3
2,254,095 - ABZR87_RS10650 0.62 -1.2
2,254,095 - ABZR87_RS10650 0.62 -1.1
2,254,095 - ABZR87_RS10650 0.62 +0.3
2,254,095 - ABZR87_RS10650 0.62 -0.1
2,254,134 + ABZR87_RS10650 0.67 +0.8
2,254,134 + ABZR87_RS10650 0.67 -0.9
2,254,135 - ABZR87_RS10650 0.67 +0.3
2,254,135 - ABZR87_RS10650 0.67 -0.2
2,254,135 - ABZR87_RS10650 0.67 +0.8
2,254,135 - ABZR87_RS10650 0.67 -0.7
2,254,388 + -0.6
2,254,388 + -0.3
2,254,388 + +0.3
2,254,389 - -0.5
2,254,389 - -0.6
2,254,390 + +1.6
2,254,390 + +1.0
2,254,390 + -0.7
2,254,390 + -1.0
2,254,390 + -2.1
2,254,390 + -1.5
2,254,391 - +0.3
2,254,391 - -0.7
2,254,404 + -0.8
2,254,405 - +0.1
2,254,421 + +0.4
2,254,421 + -0.3
2,254,421 + -1.2
2,254,421 + +0.4
2,254,421 + -0.1
2,254,422 - +0.5
2,254,422 - +1.3
2,254,422 - -1.1
2,254,422 - -1.6

Or see this region's nucleotide sequence