Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10375 and ABZR87_RS10380 are separated by 40 nucleotides ABZR87_RS10380 and ABZR87_RS10385 are separated by 80 nucleotides ABZR87_RS10385 and ABZR87_RS10390 are separated by 109 nucleotides ABZR87_RS10390 and ABZR87_RS10395 are separated by 178 nucleotides ABZR87_RS10395 and ABZR87_RS10400 are separated by 22 nucleotides
ABZR87_RS10375: ABZR87_RS10375 - thioredoxin family protein, at 2,199,996 to 2,200,730
_RS10375
ABZR87_RS10380: ABZR87_RS10380 - tRNA-Leu, at 2,200,771 to 2,200,861
_RS10380
ABZR87_RS10385: ABZR87_RS10385 - tRNA-Asn, at 2,200,942 to 2,201,017
_RS10385
ABZR87_RS10390: ABZR87_RS10390 - ferredoxin FdxA, at 2,201,127 to 2,201,456
_RS10390
ABZR87_RS10395: ABZR87_RS10395 - single-stranded-DNA-specific exonuclease RecJ, at 2,201,635 to 2,203,329
_RS10395
ABZR87_RS10400: ABZR87_RS10400 - hypothetical protein, at 2,203,352 to 2,204,443
_RS10400
Position (kb)
2201
2202
2203
2204 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2200.689 kb on + strand at 2200.689 kb on + strand at 2200.689 kb on + strand at 2200.689 kb on + strand at 2200.689 kb on + strand at 2200.690 kb on - strand at 2200.690 kb on - strand at 2200.728 kb on + strand at 2200.729 kb on - strand at 2200.729 kb on - strand at 2200.938 kb on - strand at 2201.143 kb on + strand at 2201.144 kb on - strand at 2201.541 kb on - strand at 2201.605 kb on + strand at 2201.605 kb on + strand at 2201.606 kb on - strand at 2201.636 kb on + strand at 2201.637 kb on - strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.711 kb on + strand at 2201.712 kb on - strand at 2201.712 kb on - strand at 2201.712 kb on - strand at 2201.712 kb on - strand at 2201.712 kb on - strand at 2202.210 kb on + strand, within ABZR87_RS10395 at 2202.404 kb on + strand, within ABZR87_RS10395 at 2202.404 kb on + strand, within ABZR87_RS10395 at 2202.539 kb on - strand, within ABZR87_RS10395 at 2202.743 kb on + strand, within ABZR87_RS10395 at 2202.743 kb on + strand, within ABZR87_RS10395 at 2202.744 kb on - strand, within ABZR87_RS10395 at 2202.744 kb on - strand, within ABZR87_RS10395 at 2202.744 kb on - strand, within ABZR87_RS10395 at 2202.744 kb on - strand, within ABZR87_RS10395 at 2202.873 kb on + strand, within ABZR87_RS10395 at 2202.996 kb on - strand, within ABZR87_RS10395 at 2203.019 kb on + strand, within ABZR87_RS10395 at 2203.019 kb on + strand, within ABZR87_RS10395 at 2203.020 kb on - strand, within ABZR87_RS10395 at 2203.020 kb on - strand, within ABZR87_RS10395 at 2203.020 kb on - strand, within ABZR87_RS10395 at 2203.020 kb on - strand, within ABZR87_RS10395 at 2203.020 kb on - strand, within ABZR87_RS10395 at 2203.060 kb on + strand, within ABZR87_RS10395 at 2203.091 kb on + strand, within ABZR87_RS10395 at 2203.143 kb on - strand, within ABZR87_RS10395 at 2203.618 kb on - strand, within ABZR87_RS10400 at 2203.721 kb on + strand, within ABZR87_RS10400 at 2203.722 kb on - strand, within ABZR87_RS10400 at 2203.863 kb on + strand, within ABZR87_RS10400 at 2203.864 kb on - strand, within ABZR87_RS10400 at 2204.004 kb on + strand, within ABZR87_RS10400 at 2204.005 kb on - strand, within ABZR87_RS10400 at 2204.217 kb on + strand, within ABZR87_RS10400 at 2204.295 kb on + strand, within ABZR87_RS10400 at 2204.296 kb on - strand, within ABZR87_RS10400
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,200,689 + +0.3 2,200,689 + -0.2 2,200,689 + +0.7 2,200,689 + -0.9 2,200,689 + -0.6 2,200,690 - -0.3 2,200,690 - -0.6 2,200,728 + +0.1 2,200,729 - -0.9 2,200,729 - +0.2 2,200,938 - +0.3 2,201,143 + -1.6 2,201,144 - -1.4 2,201,541 - +0.7 2,201,605 + -0.4 2,201,605 + +0.3 2,201,606 - -0.6 2,201,636 + -0.7 2,201,637 - +0.5 2,201,711 + -1.0 2,201,711 + +0.8 2,201,711 + -0.5 2,201,711 + +1.6 2,201,711 + -1.1 2,201,711 + -2.3 2,201,711 + -1.6 2,201,711 + -3.0 2,201,711 + +1.8 2,201,712 - -0.8 2,201,712 - -0.1 2,201,712 - +0.0 2,201,712 - +0.2 2,201,712 - -0.8 2,202,210 + ABZR87_RS10395 0.34 -1.0 2,202,404 + ABZR87_RS10395 0.45 +0.8 2,202,404 + ABZR87_RS10395 0.45 -0.2 2,202,539 - ABZR87_RS10395 0.53 -0.8 2,202,743 + ABZR87_RS10395 0.65 -0.6 2,202,743 + ABZR87_RS10395 0.65 -0.8 2,202,744 - ABZR87_RS10395 0.65 -0.1 2,202,744 - ABZR87_RS10395 0.65 -0.8 2,202,744 - ABZR87_RS10395 0.65 +0.3 2,202,744 - ABZR87_RS10395 0.65 +0.2 2,202,873 + ABZR87_RS10395 0.73 -1.8 2,202,996 - ABZR87_RS10395 0.80 -1.9 2,203,019 + ABZR87_RS10395 0.82 -1.0 2,203,019 + ABZR87_RS10395 0.82 -1.7 2,203,020 - ABZR87_RS10395 0.82 -1.5 2,203,020 - ABZR87_RS10395 0.82 +0.4 2,203,020 - ABZR87_RS10395 0.82 -1.1 2,203,020 - ABZR87_RS10395 0.82 +0.1 2,203,020 - ABZR87_RS10395 0.82 +0.8 2,203,060 + ABZR87_RS10395 0.84 +0.9 2,203,091 + ABZR87_RS10395 0.86 -2.8 2,203,143 - ABZR87_RS10395 0.89 -1.2 2,203,618 - ABZR87_RS10400 0.24 +0.2 2,203,721 + ABZR87_RS10400 0.34 -0.8 2,203,722 - ABZR87_RS10400 0.34 -0.3 2,203,863 + ABZR87_RS10400 0.47 +3.8 2,203,864 - ABZR87_RS10400 0.47 +1.8 2,204,004 + ABZR87_RS10400 0.60 +0.2 2,204,005 - ABZR87_RS10400 0.60 +0.8 2,204,217 + ABZR87_RS10400 0.79 -2.1 2,204,295 + ABZR87_RS10400 0.86 +2.4 2,204,296 - ABZR87_RS10400 0.86 -0.2
Or see this region's nucleotide sequence