Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10220 and ABZR87_RS10225 overlap by 4 nucleotides ABZR87_RS10225 and ABZR87_RS10230 overlap by 4 nucleotides ABZR87_RS10230 and ABZR87_RS10235 are separated by 74 nucleotides ABZR87_RS10235 and ABZR87_RS10240 are separated by 122 nucleotides
ABZR87_RS10220: ABZR87_RS10220 - pyridoxine 5'-phosphate synthase, at 2,167,671 to 2,168,462
_RS10220
ABZR87_RS10225: ABZR87_RS10225 - holo-ACP synthase, at 2,168,459 to 2,168,902
_RS10225
ABZR87_RS10230: ABZR87_RS10230 - beta-N-acetylhexosaminidase, at 2,168,899 to 2,169,948
_RS10230
ABZR87_RS10235: ABZR87_RS10235 - elongation factor P, at 2,170,023 to 2,170,592
_RS10235
ABZR87_RS10240: ABZR87_RS10240 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 2,170,715 to 2,171,908
_RS10240
Position (kb)
2168
2169
2170 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2168.458 kb on + strand at 2169.150 kb on + strand, within ABZR87_RS10230 at 2169.150 kb on + strand, within ABZR87_RS10230 at 2169.151 kb on - strand, within ABZR87_RS10230 at 2169.236 kb on - strand, within ABZR87_RS10230 at 2169.443 kb on - strand, within ABZR87_RS10230 at 2169.443 kb on - strand, within ABZR87_RS10230 at 2169.575 kb on - strand, within ABZR87_RS10230 at 2169.678 kb on + strand, within ABZR87_RS10230 at 2169.678 kb on + strand, within ABZR87_RS10230 at 2169.678 kb on + strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.679 kb on - strand, within ABZR87_RS10230 at 2169.901 kb on + strand at 2169.901 kb on + strand at 2169.947 kb on - strand at 2169.947 kb on - strand at 2170.024 kb on + strand at 2170.025 kb on - strand at 2170.025 kb on - strand at 2170.616 kb on + strand at 2170.617 kb on - strand at 2170.617 kb on - strand at 2170.617 kb on - strand at 2170.617 kb on - strand at 2170.701 kb on + strand at 2170.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,168,458 + -1.4 2,169,150 + ABZR87_RS10230 0.24 +0.0 2,169,150 + ABZR87_RS10230 0.24 +2.8 2,169,151 - ABZR87_RS10230 0.24 -1.4 2,169,236 - ABZR87_RS10230 0.32 -0.1 2,169,443 - ABZR87_RS10230 0.52 -1.6 2,169,443 - ABZR87_RS10230 0.52 -0.8 2,169,575 - ABZR87_RS10230 0.64 -0.9 2,169,678 + ABZR87_RS10230 0.74 -0.6 2,169,678 + ABZR87_RS10230 0.74 -0.3 2,169,678 + ABZR87_RS10230 0.74 -0.7 2,169,679 - ABZR87_RS10230 0.74 +0.3 2,169,679 - ABZR87_RS10230 0.74 +0.1 2,169,679 - ABZR87_RS10230 0.74 -0.3 2,169,679 - ABZR87_RS10230 0.74 +0.0 2,169,901 + -1.0 2,169,901 + +0.8 2,169,947 - -0.3 2,169,947 - +0.8 2,170,024 + -0.3 2,170,025 - -0.3 2,170,025 - +0.4 2,170,616 + -1.5 2,170,617 - +0.0 2,170,617 - -0.5 2,170,617 - -0.2 2,170,617 - +0.4 2,170,701 + -0.3 2,170,702 - -0.3
Or see this region's nucleotide sequence