Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09815 and ABZR87_RS09820 are separated by 131 nucleotides ABZR87_RS09820 and ABZR87_RS09825 are separated by 45 nucleotides ABZR87_RS09825 and ABZR87_RS09830 are separated by 9 nucleotides
ABZR87_RS09815: ABZR87_RS09815 - PLP-dependent aminotransferase family protein, at 2,086,065 to 2,087,255
_RS09815
ABZR87_RS09820: ABZR87_RS09820 - RidA family protein, at 2,087,387 to 2,087,857
_RS09820
ABZR87_RS09825: ABZR87_RS09825 - DMT family transporter, at 2,087,903 to 2,088,841
_RS09825
ABZR87_RS09830: ABZR87_RS09830 - alanyl-tRNA editing protein, at 2,088,851 to 2,089,570
_RS09830
Position (kb)
2087
2088 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2086.441 kb on + strand, within ABZR87_RS09815 at 2086.514 kb on + strand, within ABZR87_RS09815 at 2086.514 kb on + strand, within ABZR87_RS09815 at 2086.515 kb on - strand, within ABZR87_RS09815 at 2086.515 kb on - strand, within ABZR87_RS09815 at 2086.535 kb on - strand, within ABZR87_RS09815 at 2086.582 kb on + strand, within ABZR87_RS09815 at 2086.582 kb on + strand, within ABZR87_RS09815 at 2086.582 kb on + strand, within ABZR87_RS09815 at 2086.582 kb on + strand, within ABZR87_RS09815 at 2086.583 kb on - strand, within ABZR87_RS09815 at 2086.583 kb on - strand, within ABZR87_RS09815 at 2086.583 kb on - strand, within ABZR87_RS09815 at 2086.636 kb on + strand, within ABZR87_RS09815 at 2086.637 kb on - strand, within ABZR87_RS09815 at 2086.766 kb on - strand, within ABZR87_RS09815 at 2086.766 kb on - strand, within ABZR87_RS09815 at 2086.844 kb on + strand, within ABZR87_RS09815 at 2086.844 kb on + strand, within ABZR87_RS09815 at 2086.844 kb on + strand, within ABZR87_RS09815 at 2086.844 kb on + strand, within ABZR87_RS09815 at 2086.844 kb on + strand, within ABZR87_RS09815 at 2086.845 kb on - strand, within ABZR87_RS09815 at 2086.845 kb on - strand, within ABZR87_RS09815 at 2086.845 kb on - strand, within ABZR87_RS09815 at 2086.845 kb on - strand, within ABZR87_RS09815 at 2086.845 kb on - strand, within ABZR87_RS09815 at 2086.845 kb on - strand, within ABZR87_RS09815 at 2086.846 kb on + strand, within ABZR87_RS09815 at 2086.847 kb on - strand, within ABZR87_RS09815 at 2086.847 kb on - strand, within ABZR87_RS09815 at 2086.847 kb on - strand, within ABZR87_RS09815 at 2086.888 kb on + strand, within ABZR87_RS09815 at 2086.888 kb on + strand, within ABZR87_RS09815 at 2086.888 kb on + strand, within ABZR87_RS09815 at 2086.889 kb on - strand, within ABZR87_RS09815 at 2087.053 kb on + strand, within ABZR87_RS09815 at 2087.053 kb on + strand, within ABZR87_RS09815 at 2087.053 kb on + strand, within ABZR87_RS09815 at 2087.054 kb on - strand, within ABZR87_RS09815 at 2087.237 kb on + strand at 2087.238 kb on - strand at 2087.238 kb on - strand at 2087.238 kb on - strand at 2087.238 kb on - strand at 2087.266 kb on + strand at 2087.266 kb on + strand at 2087.267 kb on - strand at 2087.267 kb on - strand at 2087.323 kb on + strand at 2087.343 kb on + strand at 2087.343 kb on + strand at 2087.343 kb on + strand at 2087.775 kb on + strand, within ABZR87_RS09820 at 2087.775 kb on + strand, within ABZR87_RS09820 at 2087.776 kb on - strand, within ABZR87_RS09820 at 2087.776 kb on - strand, within ABZR87_RS09820 at 2087.871 kb on + strand at 2087.871 kb on + strand at 2087.871 kb on + strand at 2087.871 kb on + strand at 2087.872 kb on - strand at 2087.872 kb on - strand at 2087.872 kb on - strand at 2087.905 kb on - strand at 2088.041 kb on + strand, within ABZR87_RS09825 at 2088.041 kb on + strand, within ABZR87_RS09825 at 2088.041 kb on + strand, within ABZR87_RS09825 at 2088.042 kb on - strand, within ABZR87_RS09825 at 2088.084 kb on + strand, within ABZR87_RS09825 at 2088.085 kb on - strand, within ABZR87_RS09825 at 2088.122 kb on + strand, within ABZR87_RS09825 at 2088.122 kb on + strand, within ABZR87_RS09825 at 2088.123 kb on - strand, within ABZR87_RS09825 at 2088.126 kb on + strand, within ABZR87_RS09825 at 2088.126 kb on + strand, within ABZR87_RS09825 at 2088.126 kb on + strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825 at 2088.127 kb on - strand, within ABZR87_RS09825
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,086,441 + ABZR87_RS09815 0.32 -0.6 2,086,514 + ABZR87_RS09815 0.38 +1.1 2,086,514 + ABZR87_RS09815 0.38 -2.5 2,086,515 - ABZR87_RS09815 0.38 +0.1 2,086,515 - ABZR87_RS09815 0.38 +1.5 2,086,535 - ABZR87_RS09815 0.39 -0.9 2,086,582 + ABZR87_RS09815 0.43 +0.1 2,086,582 + ABZR87_RS09815 0.43 -1.5 2,086,582 + ABZR87_RS09815 0.43 -0.4 2,086,582 + ABZR87_RS09815 0.43 -0.5 2,086,583 - ABZR87_RS09815 0.43 +0.0 2,086,583 - ABZR87_RS09815 0.43 +0.6 2,086,583 - ABZR87_RS09815 0.43 -0.5 2,086,636 + ABZR87_RS09815 0.48 +0.6 2,086,637 - ABZR87_RS09815 0.48 -1.9 2,086,766 - ABZR87_RS09815 0.59 -0.3 2,086,766 - ABZR87_RS09815 0.59 +0.9 2,086,844 + ABZR87_RS09815 0.65 +0.0 2,086,844 + ABZR87_RS09815 0.65 +1.2 2,086,844 + ABZR87_RS09815 0.65 -0.3 2,086,844 + ABZR87_RS09815 0.65 +0.2 2,086,844 + ABZR87_RS09815 0.65 -2.6 2,086,845 - ABZR87_RS09815 0.65 +1.3 2,086,845 - ABZR87_RS09815 0.65 -1.2 2,086,845 - ABZR87_RS09815 0.65 -0.1 2,086,845 - ABZR87_RS09815 0.65 -0.5 2,086,845 - ABZR87_RS09815 0.65 -0.2 2,086,845 - ABZR87_RS09815 0.65 -1.0 2,086,846 + ABZR87_RS09815 0.66 -1.2 2,086,847 - ABZR87_RS09815 0.66 +0.0 2,086,847 - ABZR87_RS09815 0.66 +0.4 2,086,847 - ABZR87_RS09815 0.66 +0.0 2,086,888 + ABZR87_RS09815 0.69 +0.1 2,086,888 + ABZR87_RS09815 0.69 +0.6 2,086,888 + ABZR87_RS09815 0.69 +1.0 2,086,889 - ABZR87_RS09815 0.69 -0.5 2,087,053 + ABZR87_RS09815 0.83 -0.2 2,087,053 + ABZR87_RS09815 0.83 +0.2 2,087,053 + ABZR87_RS09815 0.83 +0.0 2,087,054 - ABZR87_RS09815 0.83 +0.8 2,087,237 + -0.3 2,087,238 - +0.0 2,087,238 - +0.0 2,087,238 - +1.8 2,087,238 - -0.6 2,087,266 + +0.0 2,087,266 + +1.3 2,087,267 - -0.8 2,087,267 - +0.3 2,087,323 + -0.4 2,087,343 + +0.2 2,087,343 + +0.1 2,087,343 + -0.8 2,087,775 + ABZR87_RS09820 0.82 -1.5 2,087,775 + ABZR87_RS09820 0.82 -0.3 2,087,776 - ABZR87_RS09820 0.83 -1.0 2,087,776 - ABZR87_RS09820 0.83 -0.6 2,087,871 + -0.1 2,087,871 + +0.7 2,087,871 + +0.2 2,087,871 + +0.4 2,087,872 - +0.2 2,087,872 - +1.7 2,087,872 - -0.4 2,087,905 - -0.4 2,088,041 + ABZR87_RS09825 0.15 -1.2 2,088,041 + ABZR87_RS09825 0.15 +1.1 2,088,041 + ABZR87_RS09825 0.15 -0.3 2,088,042 - ABZR87_RS09825 0.15 -0.4 2,088,084 + ABZR87_RS09825 0.19 -0.7 2,088,085 - ABZR87_RS09825 0.19 +0.2 2,088,122 + ABZR87_RS09825 0.23 +0.2 2,088,122 + ABZR87_RS09825 0.23 -1.5 2,088,123 - ABZR87_RS09825 0.23 -0.6 2,088,126 + ABZR87_RS09825 0.24 -0.4 2,088,126 + ABZR87_RS09825 0.24 -0.0 2,088,126 + ABZR87_RS09825 0.24 -0.3 2,088,127 - ABZR87_RS09825 0.24 -0.2 2,088,127 - ABZR87_RS09825 0.24 -0.6 2,088,127 - ABZR87_RS09825 0.24 -0.5 2,088,127 - ABZR87_RS09825 0.24 +0.0 2,088,127 - ABZR87_RS09825 0.24 -1.9 2,088,127 - ABZR87_RS09825 0.24 -0.4 2,088,127 - ABZR87_RS09825 0.24 +0.3 2,088,127 - ABZR87_RS09825 0.24 +0.2 2,088,127 - ABZR87_RS09825 0.24 -1.0
Or see this region's nucleotide sequence