Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09700 and ABZR87_RS09705 are separated by 494 nucleotides ABZR87_RS09705 and ABZR87_RS09710 are separated by 112 nucleotides ABZR87_RS09710 and ABZR87_RS09715 are separated by 311 nucleotides ABZR87_RS09715 and ABZR87_RS09720 are separated by 130 nucleotides
ABZR87_RS09700: ABZR87_RS09700 - DEAD/DEAH box helicase, at 2,054,399 to 2,056,264
_RS09700
ABZR87_RS09705: ABZR87_RS09705 - hypothetical protein, at 2,056,759 to 2,056,947
_RS09705
ABZR87_RS09710: ABZR87_RS09710 - tRNA-Arg, at 2,057,060 to 2,057,134
_RS09710
ABZR87_RS09715: ABZR87_RS09715 - hypothetical protein, at 2,057,446 to 2,057,661
_RS09715
ABZR87_RS09720: ABZR87_RS09720 - Kdo hydroxylase family protein, at 2,057,792 to 2,058,766
_RS09720
Position (kb)
2057
2058 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2056.107 kb on + strand at 2056.107 kb on + strand at 2056.107 kb on + strand at 2056.272 kb on - strand at 2056.272 kb on - strand at 2056.272 kb on - strand at 2056.272 kb on - strand at 2056.275 kb on + strand at 2056.275 kb on + strand at 2056.275 kb on + strand at 2056.275 kb on + strand at 2056.276 kb on - strand at 2056.276 kb on - strand at 2056.276 kb on - strand at 2056.278 kb on + strand at 2056.278 kb on + strand at 2056.278 kb on + strand at 2056.340 kb on + strand at 2056.606 kb on - strand at 2056.614 kb on - strand at 2056.634 kb on - strand at 2056.634 kb on - strand at 2056.634 kb on - strand at 2056.634 kb on - strand at 2056.634 kb on - strand at 2056.635 kb on + strand at 2056.635 kb on + strand at 2056.636 kb on - strand at 2056.718 kb on + strand at 2056.718 kb on + strand at 2056.718 kb on + strand at 2056.719 kb on - strand at 2056.719 kb on - strand at 2056.720 kb on + strand at 2056.720 kb on + strand at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.790 kb on + strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.791 kb on - strand, within ABZR87_RS09705 at 2056.792 kb on + strand, within ABZR87_RS09705 at 2056.792 kb on + strand, within ABZR87_RS09705 at 2056.792 kb on + strand, within ABZR87_RS09705 at 2056.792 kb on + strand, within ABZR87_RS09705 at 2056.792 kb on + strand, within ABZR87_RS09705 at 2056.793 kb on - strand, within ABZR87_RS09705 at 2056.793 kb on - strand, within ABZR87_RS09705 at 2056.793 kb on - strand, within ABZR87_RS09705 at 2056.793 kb on - strand, within ABZR87_RS09705 at 2056.793 kb on - strand, within ABZR87_RS09705 at 2056.793 kb on - strand, within ABZR87_RS09705 at 2056.794 kb on + strand, within ABZR87_RS09705 at 2056.869 kb on - strand, within ABZR87_RS09705 at 2056.945 kb on + strand at 2056.945 kb on + strand at 2056.945 kb on + strand at 2056.945 kb on + strand at 2056.945 kb on + strand at 2056.945 kb on + strand at 2056.945 kb on + strand at 2056.946 kb on - strand at 2056.946 kb on - strand at 2056.972 kb on + strand at 2056.972 kb on + strand at 2056.973 kb on - strand at 2056.973 kb on - strand at 2056.973 kb on - strand at 2056.973 kb on - strand at 2057.042 kb on + strand at 2057.043 kb on - strand at 2057.043 kb on - strand at 2057.043 kb on - strand at 2057.043 kb on - strand at 2057.088 kb on - strand, within ABZR87_RS09710 at 2057.088 kb on - strand, within ABZR87_RS09710 at 2057.098 kb on + strand, within ABZR87_RS09710 at 2057.098 kb on + strand, within ABZR87_RS09710 at 2057.098 kb on + strand, within ABZR87_RS09710 at 2057.099 kb on - strand, within ABZR87_RS09710 at 2057.099 kb on - strand, within ABZR87_RS09710 at 2057.099 kb on - strand, within ABZR87_RS09710 at 2057.184 kb on + strand at 2057.184 kb on + strand at 2057.246 kb on - strand at 2057.257 kb on - strand at 2057.286 kb on + strand at 2057.287 kb on - strand at 2057.287 kb on - strand at 2057.287 kb on - strand at 2057.287 kb on - strand at 2057.287 kb on - strand at 2057.332 kb on + strand at 2057.333 kb on - strand at 2057.367 kb on + strand at 2057.368 kb on - strand at 2057.371 kb on + strand at 2057.371 kb on + strand at 2057.374 kb on + strand at 2057.404 kb on + strand at 2057.404 kb on + strand at 2057.404 kb on + strand at 2057.404 kb on + strand at 2057.405 kb on - strand at 2057.405 kb on - strand at 2057.407 kb on - strand at 2057.545 kb on + strand, within ABZR87_RS09715 at 2057.545 kb on + strand, within ABZR87_RS09715 at 2057.546 kb on - strand, within ABZR87_RS09715 at 2057.546 kb on - strand, within ABZR87_RS09715 at 2057.546 kb on - strand, within ABZR87_RS09715 at 2057.546 kb on - strand, within ABZR87_RS09715 at 2057.709 kb on + strand at 2057.709 kb on + strand at 2057.709 kb on + strand at 2057.709 kb on + strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.710 kb on - strand at 2057.754 kb on + strand at 2057.754 kb on + strand at 2057.754 kb on + strand at 2057.755 kb on - strand at 2057.755 kb on - strand at 2057.770 kb on + strand at 2057.771 kb on - strand at 2057.771 kb on - strand at 2057.771 kb on - strand at 2057.774 kb on + strand at 2057.775 kb on - strand at 2057.785 kb on + strand at 2057.800 kb on + strand at 2057.800 kb on + strand at 2057.800 kb on + strand at 2057.800 kb on + strand at 2057.800 kb on + strand at 2057.801 kb on - strand at 2057.801 kb on - strand at 2057.801 kb on - strand at 2057.801 kb on - strand at 2057.801 kb on - strand at 2057.972 kb on - strand, within ABZR87_RS09720
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,056,107 + -2.4 2,056,107 + -2.3 2,056,107 + -0.7 2,056,272 - +0.2 2,056,272 - +0.2 2,056,272 - +0.0 2,056,272 - +0.1 2,056,275 + -0.2 2,056,275 + -0.7 2,056,275 + -1.6 2,056,275 + +0.1 2,056,276 - -0.1 2,056,276 - +0.0 2,056,276 - -1.4 2,056,278 + -1.4 2,056,278 + +2.1 2,056,278 + -0.7 2,056,340 + -0.1 2,056,606 - +0.6 2,056,614 - -0.4 2,056,634 - -1.8 2,056,634 - -0.6 2,056,634 - -1.6 2,056,634 - -0.5 2,056,634 - +0.3 2,056,635 + +0.1 2,056,635 + -2.3 2,056,636 - +0.1 2,056,718 + +0.6 2,056,718 + +2.4 2,056,718 + -0.9 2,056,719 - -0.2 2,056,719 - -0.1 2,056,720 + -0.1 2,056,720 + -0.2 2,056,790 + ABZR87_RS09705 0.16 +0.8 2,056,790 + ABZR87_RS09705 0.16 -0.1 2,056,790 + ABZR87_RS09705 0.16 -1.4 2,056,790 + ABZR87_RS09705 0.16 -0.4 2,056,790 + ABZR87_RS09705 0.16 +1.8 2,056,790 + ABZR87_RS09705 0.16 -1.1 2,056,790 + ABZR87_RS09705 0.16 -0.4 2,056,790 + ABZR87_RS09705 0.16 -0.4 2,056,790 + ABZR87_RS09705 0.16 -0.9 2,056,791 - ABZR87_RS09705 0.17 +1.6 2,056,791 - ABZR87_RS09705 0.17 -0.0 2,056,791 - ABZR87_RS09705 0.17 -1.2 2,056,791 - ABZR87_RS09705 0.17 -0.2 2,056,791 - ABZR87_RS09705 0.17 -0.9 2,056,791 - ABZR87_RS09705 0.17 -0.7 2,056,791 - ABZR87_RS09705 0.17 +0.7 2,056,791 - ABZR87_RS09705 0.17 +0.1 2,056,791 - ABZR87_RS09705 0.17 -0.1 2,056,791 - ABZR87_RS09705 0.17 -0.1 2,056,791 - ABZR87_RS09705 0.17 +0.7 2,056,792 + ABZR87_RS09705 0.17 +0.2 2,056,792 + ABZR87_RS09705 0.17 +0.6 2,056,792 + ABZR87_RS09705 0.17 +0.8 2,056,792 + ABZR87_RS09705 0.17 -0.8 2,056,792 + ABZR87_RS09705 0.17 +1.1 2,056,793 - ABZR87_RS09705 0.18 -0.0 2,056,793 - ABZR87_RS09705 0.18 +0.8 2,056,793 - ABZR87_RS09705 0.18 -0.4 2,056,793 - ABZR87_RS09705 0.18 -1.7 2,056,793 - ABZR87_RS09705 0.18 -0.6 2,056,793 - ABZR87_RS09705 0.18 +0.5 2,056,794 + ABZR87_RS09705 0.19 -0.6 2,056,869 - ABZR87_RS09705 0.58 -0.5 2,056,945 + +1.8 2,056,945 + -0.1 2,056,945 + +0.6 2,056,945 + -0.2 2,056,945 + +0.1 2,056,945 + -0.2 2,056,945 + -1.4 2,056,946 - +0.4 2,056,946 - -0.1 2,056,972 + -0.6 2,056,972 + -0.2 2,056,973 - -0.1 2,056,973 - +0.0 2,056,973 - -0.8 2,056,973 - +0.3 2,057,042 + -1.3 2,057,043 - +0.2 2,057,043 - -0.3 2,057,043 - -0.4 2,057,043 - +0.2 2,057,088 - ABZR87_RS09710 0.37 -1.0 2,057,088 - ABZR87_RS09710 0.37 -1.6 2,057,098 + ABZR87_RS09710 0.51 +0.2 2,057,098 + ABZR87_RS09710 0.51 +0.8 2,057,098 + ABZR87_RS09710 0.51 +1.0 2,057,099 - ABZR87_RS09710 0.52 -1.8 2,057,099 - ABZR87_RS09710 0.52 -2.5 2,057,099 - ABZR87_RS09710 0.52 -0.6 2,057,184 + -0.5 2,057,184 + -0.3 2,057,246 - -0.3 2,057,257 - +0.7 2,057,286 + +0.8 2,057,287 - -0.3 2,057,287 - +0.0 2,057,287 - +0.5 2,057,287 - -0.6 2,057,287 - +1.8 2,057,332 + +0.8 2,057,333 - -0.5 2,057,367 + -0.3 2,057,368 - -0.7 2,057,371 + -0.8 2,057,371 + -0.5 2,057,374 + -1.0 2,057,404 + +0.6 2,057,404 + +0.4 2,057,404 + +0.0 2,057,404 + +1.0 2,057,405 - -0.1 2,057,405 - +0.0 2,057,407 - -0.1 2,057,545 + ABZR87_RS09715 0.46 +0.7 2,057,545 + ABZR87_RS09715 0.46 -0.5 2,057,546 - ABZR87_RS09715 0.46 +0.2 2,057,546 - ABZR87_RS09715 0.46 +0.2 2,057,546 - ABZR87_RS09715 0.46 +0.1 2,057,546 - ABZR87_RS09715 0.46 +0.1 2,057,709 + +0.7 2,057,709 + +0.0 2,057,709 + -0.1 2,057,709 + +1.1 2,057,710 - +0.0 2,057,710 - -0.6 2,057,710 - +0.1 2,057,710 - +0.4 2,057,710 - +0.3 2,057,710 - -0.2 2,057,710 - +0.7 2,057,710 - +0.1 2,057,710 - +0.4 2,057,754 + +0.4 2,057,754 + +0.1 2,057,754 + -0.0 2,057,755 - -0.8 2,057,755 - +0.1 2,057,770 + +0.5 2,057,771 - -1.0 2,057,771 - +0.6 2,057,771 - +0.9 2,057,774 + -0.5 2,057,775 - -1.0 2,057,785 + +0.2 2,057,800 + +0.2 2,057,800 + +0.8 2,057,800 + +0.2 2,057,800 + +0.1 2,057,800 + -0.4 2,057,801 - +0.2 2,057,801 - +0.3 2,057,801 - -0.0 2,057,801 - +0.4 2,057,801 - +0.2 2,057,972 - ABZR87_RS09720 0.18 +0.3
Or see this region's nucleotide sequence