Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09555 and ABZR87_RS09560 are separated by 67 nucleotides ABZR87_RS09560 and ABZR87_RS09565 are separated by 123 nucleotides ABZR87_RS09565 and ABZR87_RS09570 are separated by 123 nucleotides
ABZR87_RS09555: ABZR87_RS09555 - acyl-CoA dehydrogenase, at 2,028,507 to 2,030,291
_RS09555
ABZR87_RS09560: ABZR87_RS09560 - D-amino acid dehydrogenase, at 2,030,359 to 2,031,648
_RS09560
ABZR87_RS09565: ABZR87_RS09565 - Lrp/AsnC ligand binding domain-containing protein, at 2,031,772 to 2,032,269
_RS09565
ABZR87_RS09570: ABZR87_RS09570 - alkaline phosphatase D family protein, at 2,032,393 to 2,034,012
_RS09570
Position (kb)
2030
2031
2032 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.368 kb on + strand, within ABZR87_RS09555 at 2029.369 kb on - strand, within ABZR87_RS09555 at 2029.369 kb on - strand, within ABZR87_RS09555 at 2029.369 kb on - strand, within ABZR87_RS09555 at 2029.369 kb on - strand, within ABZR87_RS09555 at 2029.441 kb on - strand, within ABZR87_RS09555 at 2029.593 kb on + strand, within ABZR87_RS09555 at 2029.593 kb on + strand, within ABZR87_RS09555 at 2029.594 kb on - strand, within ABZR87_RS09555 at 2029.594 kb on - strand, within ABZR87_RS09555 at 2029.668 kb on + strand, within ABZR87_RS09555 at 2029.676 kb on - strand, within ABZR87_RS09555 at 2029.704 kb on - strand, within ABZR87_RS09555 at 2029.704 kb on - strand, within ABZR87_RS09555 at 2029.738 kb on + strand, within ABZR87_RS09555 at 2029.791 kb on + strand, within ABZR87_RS09555 at 2029.791 kb on + strand, within ABZR87_RS09555 at 2029.791 kb on + strand, within ABZR87_RS09555 at 2029.791 kb on + strand, within ABZR87_RS09555 at 2029.792 kb on - strand, within ABZR87_RS09555 at 2029.818 kb on + strand, within ABZR87_RS09555 at 2029.818 kb on + strand, within ABZR87_RS09555 at 2029.819 kb on - strand, within ABZR87_RS09555 at 2030.074 kb on - strand, within ABZR87_RS09555 at 2030.167 kb on - strand at 2030.167 kb on - strand at 2030.167 kb on - strand at 2030.229 kb on - strand at 2030.289 kb on + strand at 2030.289 kb on + strand at 2030.289 kb on + strand at 2030.411 kb on + strand at 2030.411 kb on + strand at 2030.411 kb on + strand at 2030.411 kb on + strand at 2030.412 kb on - strand at 2030.412 kb on - strand at 2030.693 kb on + strand, within ABZR87_RS09560 at 2030.759 kb on + strand, within ABZR87_RS09560 at 2030.759 kb on + strand, within ABZR87_RS09560 at 2030.759 kb on + strand, within ABZR87_RS09560 at 2030.759 kb on + strand, within ABZR87_RS09560 at 2030.759 kb on + strand, within ABZR87_RS09560 at 2030.759 kb on + strand, within ABZR87_RS09560 at 2030.760 kb on - strand, within ABZR87_RS09560 at 2030.760 kb on - strand, within ABZR87_RS09560 at 2030.760 kb on - strand, within ABZR87_RS09560 at 2030.760 kb on - strand, within ABZR87_RS09560 at 2030.760 kb on - strand, within ABZR87_RS09560 at 2030.813 kb on - strand, within ABZR87_RS09560 at 2030.882 kb on + strand, within ABZR87_RS09560 at 2030.882 kb on + strand, within ABZR87_RS09560 at 2030.882 kb on + strand, within ABZR87_RS09560 at 2030.882 kb on + strand, within ABZR87_RS09560 at 2030.882 kb on + strand, within ABZR87_RS09560 at 2030.882 kb on + strand, within ABZR87_RS09560 at 2030.883 kb on - strand, within ABZR87_RS09560 at 2031.159 kb on - strand, within ABZR87_RS09560 at 2031.260 kb on + strand, within ABZR87_RS09560 at 2031.260 kb on + strand, within ABZR87_RS09560 at 2031.261 kb on - strand, within ABZR87_RS09560 at 2031.261 kb on - strand, within ABZR87_RS09560 at 2031.261 kb on - strand, within ABZR87_RS09560 at 2031.308 kb on + strand, within ABZR87_RS09560 at 2031.308 kb on + strand, within ABZR87_RS09560 at 2031.308 kb on + strand, within ABZR87_RS09560 at 2031.347 kb on + strand, within ABZR87_RS09560 at 2031.347 kb on + strand, within ABZR87_RS09560 at 2031.347 kb on + strand, within ABZR87_RS09560 at 2031.348 kb on - strand, within ABZR87_RS09560 at 2031.348 kb on - strand, within ABZR87_RS09560 at 2031.497 kb on + strand, within ABZR87_RS09560 at 2031.497 kb on + strand, within ABZR87_RS09560 at 2031.498 kb on - strand, within ABZR87_RS09560 at 2031.596 kb on + strand at 2031.596 kb on + strand at 2031.596 kb on + strand at 2031.596 kb on + strand at 2031.597 kb on - strand at 2031.597 kb on - strand at 2031.599 kb on + strand at 2031.599 kb on + strand at 2031.600 kb on - strand at 2031.655 kb on - strand at 2031.673 kb on + strand at 2031.674 kb on - strand at 2031.674 kb on - strand at 2031.679 kb on - strand at 2031.679 kb on - strand at 2031.693 kb on + strand at 2031.693 kb on + strand at 2031.700 kb on - strand at 2031.723 kb on - strand at 2031.724 kb on + strand at 2031.724 kb on + strand at 2031.724 kb on + strand at 2031.725 kb on - strand at 2031.767 kb on - strand at 2031.786 kb on + strand at 2031.786 kb on + strand at 2031.787 kb on - strand at 2031.787 kb on - strand at 2031.949 kb on + strand, within ABZR87_RS09565 at 2031.949 kb on + strand, within ABZR87_RS09565 at 2031.950 kb on - strand, within ABZR87_RS09565 at 2031.950 kb on - strand, within ABZR87_RS09565 at 2031.952 kb on + strand, within ABZR87_RS09565 at 2031.952 kb on + strand, within ABZR87_RS09565 at 2031.952 kb on + strand, within ABZR87_RS09565 at 2031.952 kb on + strand, within ABZR87_RS09565 at 2031.953 kb on - strand, within ABZR87_RS09565 at 2032.111 kb on + strand, within ABZR87_RS09565 at 2032.112 kb on - strand, within ABZR87_RS09565 at 2032.112 kb on - strand, within ABZR87_RS09565 at 2032.112 kb on - strand, within ABZR87_RS09565 at 2032.147 kb on + strand, within ABZR87_RS09565 at 2032.207 kb on + strand, within ABZR87_RS09565 at 2032.207 kb on + strand, within ABZR87_RS09565 at 2032.207 kb on + strand, within ABZR87_RS09565 at 2032.207 kb on + strand, within ABZR87_RS09565 at 2032.208 kb on - strand, within ABZR87_RS09565 at 2032.208 kb on - strand, within ABZR87_RS09565 at 2032.208 kb on - strand, within ABZR87_RS09565 at 2032.208 kb on - strand, within ABZR87_RS09565 at 2032.208 kb on - strand, within ABZR87_RS09565 at 2032.208 kb on - strand, within ABZR87_RS09565 at 2032.272 kb on + strand at 2032.272 kb on + strand at 2032.272 kb on + strand at 2032.272 kb on + strand at 2032.272 kb on + strand at 2032.272 kb on + strand at 2032.272 kb on + strand at 2032.273 kb on - strand at 2032.273 kb on - strand at 2032.273 kb on - strand at 2032.273 kb on - strand at 2032.273 kb on - strand at 2032.273 kb on - strand at 2032.273 kb on - strand at 2032.331 kb on + strand at 2032.331 kb on + strand at 2032.331 kb on + strand at 2032.331 kb on + strand at 2032.353 kb on + strand at 2032.353 kb on + strand at 2032.354 kb on - strand at 2032.428 kb on + strand at 2032.429 kb on - strand at 2032.429 kb on - strand at 2032.483 kb on - strand at 2032.575 kb on + strand, within ABZR87_RS09570
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,029,368 + ABZR87_RS09555 0.48 +0.2 2,029,368 + ABZR87_RS09555 0.48 +0.4 2,029,368 + ABZR87_RS09555 0.48 +0.4 2,029,368 + ABZR87_RS09555 0.48 -0.4 2,029,368 + ABZR87_RS09555 0.48 -0.6 2,029,368 + ABZR87_RS09555 0.48 +0.2 2,029,368 + ABZR87_RS09555 0.48 +0.0 2,029,369 - ABZR87_RS09555 0.48 +0.8 2,029,369 - ABZR87_RS09555 0.48 +0.4 2,029,369 - ABZR87_RS09555 0.48 -0.2 2,029,369 - ABZR87_RS09555 0.48 -0.2 2,029,441 - ABZR87_RS09555 0.52 +0.3 2,029,593 + ABZR87_RS09555 0.61 +0.8 2,029,593 + ABZR87_RS09555 0.61 +0.3 2,029,594 - ABZR87_RS09555 0.61 -0.3 2,029,594 - ABZR87_RS09555 0.61 -1.5 2,029,668 + ABZR87_RS09555 0.65 -0.0 2,029,676 - ABZR87_RS09555 0.65 -0.5 2,029,704 - ABZR87_RS09555 0.67 -0.6 2,029,704 - ABZR87_RS09555 0.67 -0.4 2,029,738 + ABZR87_RS09555 0.69 +0.6 2,029,791 + ABZR87_RS09555 0.72 +0.7 2,029,791 + ABZR87_RS09555 0.72 -0.5 2,029,791 + ABZR87_RS09555 0.72 +0.2 2,029,791 + ABZR87_RS09555 0.72 +0.8 2,029,792 - ABZR87_RS09555 0.72 +0.9 2,029,818 + ABZR87_RS09555 0.73 +0.2 2,029,818 + ABZR87_RS09555 0.73 +0.0 2,029,819 - ABZR87_RS09555 0.74 -0.1 2,030,074 - ABZR87_RS09555 0.88 -0.4 2,030,167 - +0.1 2,030,167 - -0.7 2,030,167 - -1.1 2,030,229 - -0.2 2,030,289 + +0.1 2,030,289 + -0.3 2,030,289 + +0.7 2,030,411 + -0.3 2,030,411 + +0.3 2,030,411 + -0.3 2,030,411 + -0.1 2,030,412 - -1.0 2,030,412 - -1.0 2,030,693 + ABZR87_RS09560 0.26 -1.2 2,030,759 + ABZR87_RS09560 0.31 -0.5 2,030,759 + ABZR87_RS09560 0.31 -2.2 2,030,759 + ABZR87_RS09560 0.31 -0.5 2,030,759 + ABZR87_RS09560 0.31 -0.3 2,030,759 + ABZR87_RS09560 0.31 -0.9 2,030,759 + ABZR87_RS09560 0.31 +1.8 2,030,760 - ABZR87_RS09560 0.31 -0.7 2,030,760 - ABZR87_RS09560 0.31 -0.6 2,030,760 - ABZR87_RS09560 0.31 -1.4 2,030,760 - ABZR87_RS09560 0.31 -2.1 2,030,760 - ABZR87_RS09560 0.31 -1.0 2,030,813 - ABZR87_RS09560 0.35 -0.2 2,030,882 + ABZR87_RS09560 0.41 -1.5 2,030,882 + ABZR87_RS09560 0.41 +1.2 2,030,882 + ABZR87_RS09560 0.41 +2.4 2,030,882 + ABZR87_RS09560 0.41 +0.7 2,030,882 + ABZR87_RS09560 0.41 +0.3 2,030,882 + ABZR87_RS09560 0.41 -0.6 2,030,883 - ABZR87_RS09560 0.41 -0.7 2,031,159 - ABZR87_RS09560 0.62 -1.1 2,031,260 + ABZR87_RS09560 0.70 -0.2 2,031,260 + ABZR87_RS09560 0.70 -1.7 2,031,261 - ABZR87_RS09560 0.70 +0.1 2,031,261 - ABZR87_RS09560 0.70 -0.6 2,031,261 - ABZR87_RS09560 0.70 -0.8 2,031,308 + ABZR87_RS09560 0.74 -0.7 2,031,308 + ABZR87_RS09560 0.74 -0.7 2,031,308 + ABZR87_RS09560 0.74 -1.1 2,031,347 + ABZR87_RS09560 0.77 -0.0 2,031,347 + ABZR87_RS09560 0.77 -1.1 2,031,347 + ABZR87_RS09560 0.77 -0.9 2,031,348 - ABZR87_RS09560 0.77 -0.5 2,031,348 - ABZR87_RS09560 0.77 -1.2 2,031,497 + ABZR87_RS09560 0.88 -1.7 2,031,497 + ABZR87_RS09560 0.88 -1.4 2,031,498 - ABZR87_RS09560 0.88 -0.7 2,031,596 + -1.4 2,031,596 + +0.2 2,031,596 + -0.4 2,031,596 + -2.4 2,031,597 - -1.5 2,031,597 - -0.6 2,031,599 + -1.8 2,031,599 + -0.6 2,031,600 - -1.2 2,031,655 - -1.4 2,031,673 + -0.9 2,031,674 - +0.8 2,031,674 - -0.5 2,031,679 - -0.2 2,031,679 - -0.5 2,031,693 + -1.2 2,031,693 + -0.1 2,031,700 - +0.1 2,031,723 - -0.5 2,031,724 + -1.2 2,031,724 + -0.5 2,031,724 + -0.9 2,031,725 - -0.8 2,031,767 - +0.1 2,031,786 + -0.7 2,031,786 + -1.1 2,031,787 - -0.3 2,031,787 - -0.2 2,031,949 + ABZR87_RS09565 0.36 -0.1 2,031,949 + ABZR87_RS09565 0.36 -0.9 2,031,950 - ABZR87_RS09565 0.36 +0.2 2,031,950 - ABZR87_RS09565 0.36 +0.0 2,031,952 + ABZR87_RS09565 0.36 -0.2 2,031,952 + ABZR87_RS09565 0.36 -1.2 2,031,952 + ABZR87_RS09565 0.36 -0.2 2,031,952 + ABZR87_RS09565 0.36 -0.7 2,031,953 - ABZR87_RS09565 0.36 -0.5 2,032,111 + ABZR87_RS09565 0.68 +0.4 2,032,112 - ABZR87_RS09565 0.68 -2.1 2,032,112 - ABZR87_RS09565 0.68 -0.3 2,032,112 - ABZR87_RS09565 0.68 -0.5 2,032,147 + ABZR87_RS09565 0.75 -2.1 2,032,207 + ABZR87_RS09565 0.87 -0.5 2,032,207 + ABZR87_RS09565 0.87 +0.1 2,032,207 + ABZR87_RS09565 0.87 -0.2 2,032,207 + ABZR87_RS09565 0.87 +0.2 2,032,208 - ABZR87_RS09565 0.88 -1.0 2,032,208 - ABZR87_RS09565 0.88 -1.4 2,032,208 - ABZR87_RS09565 0.88 +0.5 2,032,208 - ABZR87_RS09565 0.88 -0.1 2,032,208 - ABZR87_RS09565 0.88 -0.3 2,032,208 - ABZR87_RS09565 0.88 -0.6 2,032,272 + -0.5 2,032,272 + -0.7 2,032,272 + -0.5 2,032,272 + -0.2 2,032,272 + -0.7 2,032,272 + -0.0 2,032,272 + -1.2 2,032,273 - -0.1 2,032,273 - -1.0 2,032,273 - -0.8 2,032,273 - -0.5 2,032,273 - +0.0 2,032,273 - -0.3 2,032,273 - -2.8 2,032,331 + +0.4 2,032,331 + -0.4 2,032,331 + -0.7 2,032,331 + +0.2 2,032,353 + -0.3 2,032,353 + -2.9 2,032,354 - -0.8 2,032,428 + +0.9 2,032,429 - -0.5 2,032,429 - -0.4 2,032,483 - -0.3 2,032,575 + ABZR87_RS09570 0.11 +0.3
Or see this region's nucleotide sequence