Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09495 and ABZR87_RS09500 are separated by 38 nucleotides ABZR87_RS09500 and ABZR87_RS09505 are separated by 18 nucleotides
ABZR87_RS09495: ABZR87_RS09495 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,016,639 to 2,018,003
_RS09495
ABZR87_RS09500: ABZR87_RS09500 - D-glycero-beta-D-manno-heptose-7-phosphate kinase, at 2,018,042 to 2,018,974
_RS09500
ABZR87_RS09505: ABZR87_RS09505 - ADP-glyceromanno-heptose 6-epimerase, at 2,018,993 to 2,019,988
_RS09505
Position (kb)
2018
2019 Strain fitness (log2 ratio)
-2
-1
0
1 at 2018.001 kb on + strand at 2018.002 kb on - strand at 2018.002 kb on - strand at 2018.498 kb on + strand, within ABZR87_RS09500 at 2018.592 kb on - strand, within ABZR87_RS09500 at 2018.601 kb on - strand, within ABZR87_RS09500 at 2018.601 kb on - strand, within ABZR87_RS09500 at 2018.762 kb on + strand, within ABZR87_RS09500 at 2018.762 kb on + strand, within ABZR87_RS09500 at 2018.763 kb on - strand, within ABZR87_RS09500 at 2019.254 kb on + strand, within ABZR87_RS09505 at 2019.254 kb on + strand, within ABZR87_RS09505 at 2019.255 kb on - strand, within ABZR87_RS09505 at 2019.255 kb on - strand, within ABZR87_RS09505 at 2019.255 kb on - strand, within ABZR87_RS09505 at 2019.272 kb on + strand, within ABZR87_RS09505 at 2019.272 kb on + strand, within ABZR87_RS09505 at 2019.273 kb on - strand, within ABZR87_RS09505 at 2019.329 kb on + strand, within ABZR87_RS09505 at 2019.350 kb on + strand, within ABZR87_RS09505 at 2019.351 kb on - strand, within ABZR87_RS09505 at 2019.407 kb on + strand, within ABZR87_RS09505 at 2019.408 kb on - strand, within ABZR87_RS09505 at 2019.408 kb on - strand, within ABZR87_RS09505 at 2019.488 kb on + strand, within ABZR87_RS09505 at 2019.500 kb on + strand, within ABZR87_RS09505 at 2019.577 kb on + strand, within ABZR87_RS09505 at 2019.577 kb on + strand, within ABZR87_RS09505 at 2019.599 kb on + strand, within ABZR87_RS09505 at 2019.833 kb on + strand, within ABZR87_RS09505 at 2019.866 kb on + strand, within ABZR87_RS09505 at 2019.867 kb on - strand, within ABZR87_RS09505 at 2019.867 kb on - strand, within ABZR87_RS09505 at 2019.867 kb on - strand, within ABZR87_RS09505 at 2019.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 2,018,001 + -0.1 2,018,002 - -1.2 2,018,002 - +0.1 2,018,498 + ABZR87_RS09500 0.49 -0.8 2,018,592 - ABZR87_RS09500 0.59 -1.7 2,018,601 - ABZR87_RS09500 0.60 -0.7 2,018,601 - ABZR87_RS09500 0.60 +0.8 2,018,762 + ABZR87_RS09500 0.77 -0.0 2,018,762 + ABZR87_RS09500 0.77 -0.8 2,018,763 - ABZR87_RS09500 0.77 -1.9 2,019,254 + ABZR87_RS09505 0.26 -2.5 2,019,254 + ABZR87_RS09505 0.26 -2.6 2,019,255 - ABZR87_RS09505 0.26 -0.9 2,019,255 - ABZR87_RS09505 0.26 -0.8 2,019,255 - ABZR87_RS09505 0.26 -0.5 2,019,272 + ABZR87_RS09505 0.28 -0.7 2,019,272 + ABZR87_RS09505 0.28 -1.9 2,019,273 - ABZR87_RS09505 0.28 +0.9 2,019,329 + ABZR87_RS09505 0.34 -0.9 2,019,350 + ABZR87_RS09505 0.36 -0.7 2,019,351 - ABZR87_RS09505 0.36 -0.0 2,019,407 + ABZR87_RS09505 0.42 -2.1 2,019,408 - ABZR87_RS09505 0.42 -1.8 2,019,408 - ABZR87_RS09505 0.42 -0.8 2,019,488 + ABZR87_RS09505 0.50 +1.1 2,019,500 + ABZR87_RS09505 0.51 +1.5 2,019,577 + ABZR87_RS09505 0.59 -0.4 2,019,577 + ABZR87_RS09505 0.59 +0.1 2,019,599 + ABZR87_RS09505 0.61 -0.4 2,019,833 + ABZR87_RS09505 0.84 -0.4 2,019,866 + ABZR87_RS09505 0.88 -1.2 2,019,867 - ABZR87_RS09505 0.88 -0.8 2,019,867 - ABZR87_RS09505 0.88 -0.5 2,019,867 - ABZR87_RS09505 0.88 -1.9 2,019,915 - -1.6
Or see this region's nucleotide sequence