Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08560 and ABZR87_RS08565 are separated by 531 nucleotides ABZR87_RS08565 and ABZR87_RS08570 are separated by 215 nucleotides ABZR87_RS08570 and ABZR87_RS08575 are separated by 292 nucleotides
ABZR87_RS08560: ABZR87_RS08560 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,815,762 to 1,816,670
_RS08560
ABZR87_RS08565: ABZR87_RS08565 - glutamate-1-semialdehyde 2,1-aminomutase, at 1,817,202 to 1,818,503
_RS08565
ABZR87_RS08570: ABZR87_RS08570 - rubredoxin, at 1,818,719 to 1,818,901
_RS08570
ABZR87_RS08575: ABZR87_RS08575 - response regulator, at 1,819,194 to 1,819,691
_RS08575
Position (kb)
1817
1818
1819 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1816.206 kb on + strand, within ABZR87_RS08560 at 1816.206 kb on + strand, within ABZR87_RS08560 at 1816.206 kb on + strand, within ABZR87_RS08560 at 1816.206 kb on + strand, within ABZR87_RS08560 at 1816.206 kb on + strand, within ABZR87_RS08560 at 1816.207 kb on - strand, within ABZR87_RS08560 at 1816.207 kb on - strand, within ABZR87_RS08560 at 1816.207 kb on - strand, within ABZR87_RS08560 at 1816.207 kb on - strand, within ABZR87_RS08560 at 1816.703 kb on - strand at 1817.213 kb on + strand at 1817.213 kb on + strand at 1817.214 kb on - strand at 1818.578 kb on + strand at 1818.688 kb on + strand at 1818.688 kb on + strand at 1818.688 kb on + strand at 1818.688 kb on + strand at 1818.688 kb on + strand at 1818.691 kb on + strand at 1818.691 kb on + strand at 1818.962 kb on + strand at 1818.962 kb on + strand at 1818.962 kb on + strand at 1818.963 kb on - strand at 1818.963 kb on - strand at 1818.963 kb on - strand at 1819.047 kb on + strand at 1819.047 kb on + strand at 1819.047 kb on + strand at 1819.047 kb on + strand at 1819.047 kb on + strand at 1819.048 kb on - strand at 1819.048 kb on - strand at 1819.048 kb on - strand at 1819.048 kb on - strand at 1819.048 kb on - strand at 1819.048 kb on - strand at 1819.092 kb on + strand at 1819.092 kb on + strand at 1819.092 kb on + strand at 1819.110 kb on + strand at 1819.324 kb on + strand, within ABZR87_RS08575 at 1819.324 kb on + strand, within ABZR87_RS08575 at 1819.325 kb on - strand, within ABZR87_RS08575 at 1819.325 kb on - strand, within ABZR87_RS08575 at 1819.488 kb on + strand, within ABZR87_RS08575 at 1819.489 kb on - strand, within ABZR87_RS08575
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,816,206 + ABZR87_RS08560 0.49 -1.7 1,816,206 + ABZR87_RS08560 0.49 -1.4 1,816,206 + ABZR87_RS08560 0.49 -0.0 1,816,206 + ABZR87_RS08560 0.49 +0.5 1,816,206 + ABZR87_RS08560 0.49 +0.5 1,816,207 - ABZR87_RS08560 0.49 +0.2 1,816,207 - ABZR87_RS08560 0.49 -0.5 1,816,207 - ABZR87_RS08560 0.49 -1.8 1,816,207 - ABZR87_RS08560 0.49 -0.1 1,816,703 - -1.3 1,817,213 + +0.1 1,817,213 + +0.1 1,817,214 - -0.1 1,818,578 + -0.8 1,818,688 + -0.9 1,818,688 + -0.8 1,818,688 + -0.5 1,818,688 + -0.2 1,818,688 + +0.5 1,818,691 + +0.1 1,818,691 + -0.3 1,818,962 + +0.2 1,818,962 + -0.1 1,818,962 + -0.1 1,818,963 - -1.9 1,818,963 - -1.4 1,818,963 - -1.3 1,819,047 + -0.4 1,819,047 + -0.4 1,819,047 + -0.4 1,819,047 + +0.1 1,819,047 + -0.3 1,819,048 - -2.5 1,819,048 - -0.8 1,819,048 - -1.2 1,819,048 - +0.8 1,819,048 - -1.9 1,819,048 - -2.9 1,819,092 + +0.0 1,819,092 + -0.7 1,819,092 + +0.0 1,819,110 + -0.2 1,819,324 + ABZR87_RS08575 0.26 -0.3 1,819,324 + ABZR87_RS08575 0.26 -0.7 1,819,325 - ABZR87_RS08575 0.26 -0.6 1,819,325 - ABZR87_RS08575 0.26 -2.3 1,819,488 + ABZR87_RS08575 0.59 +0.7 1,819,489 - ABZR87_RS08575 0.59 -1.3
Or see this region's nucleotide sequence