Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08235

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08225 and ABZR87_RS08230 are separated by 138 nucleotidesABZR87_RS08230 and ABZR87_RS08235 overlap by 2 nucleotidesABZR87_RS08235 and ABZR87_RS08240 overlap by 4 nucleotidesABZR87_RS08240 and ABZR87_RS08245 are separated by 16 nucleotidesABZR87_RS08245 and ABZR87_RS08250 are separated by 218 nucleotides ABZR87_RS08225: ABZR87_RS08225 - hypothetical protein, at 1,749,440 to 1,750,072 _RS08225 ABZR87_RS08230: ABZR87_RS08230 - hypothetical protein, at 1,750,211 to 1,750,798 _RS08230 ABZR87_RS08235: ABZR87_RS08235 - hypothetical protein, at 1,750,797 to 1,751,255 _RS08235 ABZR87_RS08240: ABZR87_RS08240 - hypothetical protein, at 1,751,252 to 1,751,452 _RS08240 ABZR87_RS08245: ABZR87_RS08245 - hypothetical protein, at 1,751,469 to 1,751,810 _RS08245 ABZR87_RS08250: ABZR87_RS08250 - PLP-dependent aminotransferase family protein, at 1,752,029 to 1,753,492 _RS08250 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.822 kb on + strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1749.823 kb on - strand, within ABZR87_RS08225at 1750.061 kb on + strandat 1750.062 kb on - strandat 1750.062 kb on - strandat 1750.248 kb on + strandat 1750.248 kb on + strandat 1750.248 kb on + strandat 1750.248 kb on + strandat 1750.248 kb on - strandat 1750.249 kb on - strandat 1750.249 kb on - strandat 1750.249 kb on - strandat 1750.249 kb on - strandat 1750.472 kb on + strand, within ABZR87_RS08230at 1750.472 kb on + strand, within ABZR87_RS08230at 1750.505 kb on + strand, within ABZR87_RS08230at 1750.505 kb on + strand, within ABZR87_RS08230at 1750.506 kb on - strand, within ABZR87_RS08230at 1750.779 kb on + strandat 1750.859 kb on + strand, within ABZR87_RS08235at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.656 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.703 kb on - strand, within ABZR87_RS08245at 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.839 kb on - strandat 1751.839 kb on - strandat 1751.922 kb on + strandat 1751.923 kb on - strandat 1751.923 kb on - strandat 1751.923 kb on - strandat 1751.942 kb on - strandat 1752.072 kb on - strandat 1752.072 kb on - strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.093 kb on - strandat 1752.198 kb on + strand, within ABZR87_RS08250at 1752.198 kb on + strand, within ABZR87_RS08250at 1752.198 kb on + strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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1,749,822 + ABZR87_RS08225 0.60 -0.6
1,749,822 + ABZR87_RS08225 0.60 -0.4
1,749,822 + ABZR87_RS08225 0.60 +0.3
1,749,822 + ABZR87_RS08225 0.60 +1.2
1,749,823 - ABZR87_RS08225 0.61 -0.3
1,749,823 - ABZR87_RS08225 0.61 -1.1
1,749,823 - ABZR87_RS08225 0.61 -0.2
1,749,823 - ABZR87_RS08225 0.61 +0.1
1,749,823 - ABZR87_RS08225 0.61 -0.7
1,750,061 + -0.7
1,750,062 - -0.6
1,750,062 - -0.7
1,750,248 + -0.5
1,750,248 + +0.2
1,750,248 + +0.5
1,750,248 + -1.1
1,750,248 - -0.1
1,750,249 - +0.4
1,750,249 - +0.0
1,750,249 - +0.3
1,750,249 - +2.4
1,750,472 + ABZR87_RS08230 0.44 -0.1
1,750,472 + ABZR87_RS08230 0.44 -0.4
1,750,505 + ABZR87_RS08230 0.50 +0.3
1,750,505 + ABZR87_RS08230 0.50 +0.8
1,750,506 - ABZR87_RS08230 0.50 -0.9
1,750,779 + +0.3
1,750,859 + ABZR87_RS08235 0.14 -0.7
1,751,654 + ABZR87_RS08245 0.54 -1.9
1,751,654 + ABZR87_RS08245 0.54 +1.5
1,751,655 - ABZR87_RS08245 0.54 +0.8
1,751,655 - ABZR87_RS08245 0.54 -0.4
1,751,655 - ABZR87_RS08245 0.54 +0.4
1,751,655 - ABZR87_RS08245 0.54 -1.6
1,751,656 + ABZR87_RS08245 0.55 +0.2
1,751,702 + ABZR87_RS08245 0.68 -0.6
1,751,702 + ABZR87_RS08245 0.68 +0.7
1,751,702 + ABZR87_RS08245 0.68 -1.0
1,751,702 + ABZR87_RS08245 0.68 -0.7
1,751,703 - ABZR87_RS08245 0.68 -0.9
1,751,838 + -1.0
1,751,838 + +0.3
1,751,838 + -0.0
1,751,838 + +1.1
1,751,839 - +0.8
1,751,839 - -0.6
1,751,922 + -0.4
1,751,923 - +0.1
1,751,923 - -0.0
1,751,923 - -0.1
1,751,942 - -0.7
1,752,072 - +0.1
1,752,072 - +0.1
1,752,092 + +0.3
1,752,092 + +0.4
1,752,092 + -1.1
1,752,092 + +0.8
1,752,093 - +0.8
1,752,198 + ABZR87_RS08250 0.12 +0.3
1,752,198 + ABZR87_RS08250 0.12 +2.4
1,752,198 + ABZR87_RS08250 0.12 -1.4
1,752,199 - ABZR87_RS08250 0.12 -0.5
1,752,199 - ABZR87_RS08250 0.12 -1.0
1,752,199 - ABZR87_RS08250 0.12 +0.2

Or see this region's nucleotide sequence