Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07620 and ABZR87_RS07625 are separated by 63 nucleotides ABZR87_RS07625 and ABZR87_RS07630 are separated by 99 nucleotides
ABZR87_RS07620: ABZR87_RS07620 - Holliday junction branch migration DNA helicase RuvB, at 1,614,475 to 1,615,551
_RS07620
ABZR87_RS07625: ABZR87_RS07625 - Holliday junction branch migration protein RuvA, at 1,615,615 to 1,616,196
_RS07625
ABZR87_RS07630: ABZR87_RS07630 - glycerophosphodiester phosphodiesterase, at 1,616,296 to 1,617,438
_RS07630
Position (kb)
1615
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1 at 1614.966 kb on + strand, within ABZR87_RS07620 at 1614.968 kb on + strand, within ABZR87_RS07620 at 1614.968 kb on + strand, within ABZR87_RS07620 at 1614.969 kb on - strand, within ABZR87_RS07620 at 1614.969 kb on - strand, within ABZR87_RS07620 at 1614.969 kb on - strand, within ABZR87_RS07620 at 1615.122 kb on - strand, within ABZR87_RS07620 at 1615.427 kb on + strand, within ABZR87_RS07620 at 1615.427 kb on + strand, within ABZR87_RS07620 at 1615.428 kb on - strand, within ABZR87_RS07620 at 1615.428 kb on - strand, within ABZR87_RS07620 at 1615.592 kb on + strand at 1615.592 kb on + strand at 1615.592 kb on + strand at 1615.593 kb on - strand at 1615.593 kb on - strand at 1615.593 kb on - strand at 1615.716 kb on - strand, within ABZR87_RS07625 at 1615.920 kb on + strand, within ABZR87_RS07625 at 1615.921 kb on - strand, within ABZR87_RS07625 at 1616.090 kb on + strand, within ABZR87_RS07625 at 1616.090 kb on + strand, within ABZR87_RS07625 at 1616.090 kb on + strand, within ABZR87_RS07625 at 1616.091 kb on - strand, within ABZR87_RS07625 at 1616.243 kb on - strand at 1616.275 kb on + strand at 1616.347 kb on - strand at 1616.419 kb on - strand, within ABZR87_RS07630 at 1616.474 kb on + strand, within ABZR87_RS07630 at 1616.474 kb on + strand, within ABZR87_RS07630 at 1616.474 kb on + strand, within ABZR87_RS07630 at 1616.474 kb on + strand, within ABZR87_RS07630 at 1616.475 kb on - strand, within ABZR87_RS07630 at 1616.594 kb on + strand, within ABZR87_RS07630 at 1616.708 kb on - strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.867 kb on - strand, within ABZR87_RS07630 at 1616.870 kb on + strand, within ABZR87_RS07630 at 1616.871 kb on - strand, within ABZR87_RS07630 at 1616.895 kb on - strand, within ABZR87_RS07630
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,614,966 + ABZR87_RS07620 0.46 -0.7 1,614,968 + ABZR87_RS07620 0.46 +1.3 1,614,968 + ABZR87_RS07620 0.46 -0.9 1,614,969 - ABZR87_RS07620 0.46 -1.1 1,614,969 - ABZR87_RS07620 0.46 -1.3 1,614,969 - ABZR87_RS07620 0.46 -0.1 1,615,122 - ABZR87_RS07620 0.60 +0.3 1,615,427 + ABZR87_RS07620 0.88 -2.1 1,615,427 + ABZR87_RS07620 0.88 -0.7 1,615,428 - ABZR87_RS07620 0.88 +1.3 1,615,428 - ABZR87_RS07620 0.88 -1.5 1,615,592 + +1.3 1,615,592 + -0.2 1,615,592 + +0.6 1,615,593 - -0.4 1,615,593 - +0.1 1,615,593 - -0.2 1,615,716 - ABZR87_RS07625 0.17 -1.5 1,615,920 + ABZR87_RS07625 0.52 +0.3 1,615,921 - ABZR87_RS07625 0.53 +0.6 1,616,090 + ABZR87_RS07625 0.82 +0.1 1,616,090 + ABZR87_RS07625 0.82 -1.3 1,616,090 + ABZR87_RS07625 0.82 +0.3 1,616,091 - ABZR87_RS07625 0.82 -1.3 1,616,243 - -0.3 1,616,275 + -1.9 1,616,347 - +0.3 1,616,419 - ABZR87_RS07630 0.11 -0.3 1,616,474 + ABZR87_RS07630 0.16 -0.1 1,616,474 + ABZR87_RS07630 0.16 +0.6 1,616,474 + ABZR87_RS07630 0.16 -0.9 1,616,474 + ABZR87_RS07630 0.16 -0.1 1,616,475 - ABZR87_RS07630 0.16 -0.7 1,616,594 + ABZR87_RS07630 0.26 -0.4 1,616,708 - ABZR87_RS07630 0.36 +1.3 1,616,783 + ABZR87_RS07630 0.43 +0.8 1,616,783 + ABZR87_RS07630 0.43 +0.7 1,616,783 + ABZR87_RS07630 0.43 -0.3 1,616,784 - ABZR87_RS07630 0.43 +0.5 1,616,784 - ABZR87_RS07630 0.43 +0.3 1,616,784 - ABZR87_RS07630 0.43 -0.3 1,616,784 - ABZR87_RS07630 0.43 +0.9 1,616,867 - ABZR87_RS07630 0.50 +0.8 1,616,870 + ABZR87_RS07630 0.50 -0.6 1,616,871 - ABZR87_RS07630 0.50 -0.5 1,616,895 - ABZR87_RS07630 0.52 +0.6
Or see this region's nucleotide sequence