Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06645

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06635 and ABZR87_RS06640 are separated by 62 nucleotidesABZR87_RS06640 and ABZR87_RS06645 are separated by 137 nucleotidesABZR87_RS06645 and ABZR87_RS06650 are separated by 102 nucleotidesABZR87_RS06650 and ABZR87_RS06655 are separated by 90 nucleotides ABZR87_RS06635: ABZR87_RS06635 - sigma-54 dependent transcriptional regulator, at 1,412,599 to 1,413,915 _RS06635 ABZR87_RS06640: ABZR87_RS06640 - DUF2278 family protein, at 1,413,978 to 1,414,715 _RS06640 ABZR87_RS06645: ABZR87_RS06645 - TlpA disulfide reductase family protein, at 1,414,853 to 1,415,410 _RS06645 ABZR87_RS06650: ABZR87_RS06650 - O-acetyl-ADP-ribose deacetylase, at 1,415,513 to 1,416,028 _RS06650 ABZR87_RS06655: ABZR87_RS06655 - hypothetical protein, at 1,416,119 to 1,416,688 _RS06655 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1413.886 kb on + strandat 1413.886 kb on + strandat 1413.886 kb on + strandat 1413.887 kb on - strandat 1413.904 kb on + strandat 1413.905 kb on - strandat 1413.905 kb on - strandat 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.148 kb on + strand, within ABZR87_RS06640at 1414.149 kb on - strand, within ABZR87_RS06640at 1414.149 kb on - strand, within ABZR87_RS06640at 1414.228 kb on + strand, within ABZR87_RS06640at 1414.229 kb on - strand, within ABZR87_RS06640at 1414.229 kb on - strand, within ABZR87_RS06640at 1414.291 kb on + strand, within ABZR87_RS06640at 1414.291 kb on + strand, within ABZR87_RS06640at 1414.292 kb on - strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.297 kb on + strand, within ABZR87_RS06640at 1414.298 kb on - strand, within ABZR87_RS06640at 1414.298 kb on - strand, within ABZR87_RS06640at 1414.298 kb on - strand, within ABZR87_RS06640at 1414.376 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.432 kb on + strand, within ABZR87_RS06640at 1414.433 kb on - strand, within ABZR87_RS06640at 1414.525 kb on + strand, within ABZR87_RS06640at 1414.525 kb on + strand, within ABZR87_RS06640at 1414.525 kb on + strand, within ABZR87_RS06640at 1414.526 kb on - strand, within ABZR87_RS06640at 1414.526 kb on - strand, within ABZR87_RS06640at 1414.633 kb on + strand, within ABZR87_RS06640at 1414.633 kb on + strand, within ABZR87_RS06640at 1414.651 kb on + strandat 1414.652 kb on - strandat 1414.652 kb on - strandat 1414.663 kb on + strandat 1414.663 kb on + strandat 1414.664 kb on - strandat 1414.702 kb on + strandat 1414.702 kb on + strandat 1414.702 kb on + strandat 1414.703 kb on - strandat 1414.703 kb on - strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.774 kb on + strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.775 kb on - strandat 1414.920 kb on + strand, within ABZR87_RS06645at 1415.065 kb on - strand, within ABZR87_RS06645at 1415.065 kb on - strand, within ABZR87_RS06645at 1415.080 kb on - strand, within ABZR87_RS06645at 1415.105 kb on + strand, within ABZR87_RS06645at 1415.130 kb on + strand, within ABZR87_RS06645at 1415.131 kb on - strand, within ABZR87_RS06645at 1415.445 kb on + strandat 1415.445 kb on + strandat 1415.446 kb on - strandat 1415.446 kb on - strandat 1415.446 kb on - strandat 1415.446 kb on - strandat 1415.446 kb on - strandat 1415.450 kb on + strandat 1415.450 kb on + strandat 1415.450 kb on + strandat 1415.450 kb on + strandat 1415.450 kb on + strandat 1415.450 kb on + strandat 1415.451 kb on - strandat 1415.451 kb on - strandat 1415.451 kb on - strandat 1415.451 kb on - strandat 1415.451 kb on - strandat 1415.541 kb on + strandat 1415.541 kb on + strandat 1415.541 kb on + strandat 1415.542 kb on - strandat 1415.542 kb on - strandat 1415.542 kb on - strandat 1415.542 kb on - strandat 1415.618 kb on + strand, within ABZR87_RS06650at 1415.618 kb on + strand, within ABZR87_RS06650at 1415.618 kb on + strand, within ABZR87_RS06650at 1415.618 kb on + strand, within ABZR87_RS06650at 1415.618 kb on + strand, within ABZR87_RS06650at 1415.618 kb on + strand, within ABZR87_RS06650at 1415.618 kb on + strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.619 kb on - strand, within ABZR87_RS06650at 1415.655 kb on + strand, within ABZR87_RS06650at 1415.655 kb on + strand, within ABZR87_RS06650at 1415.655 kb on + strand, within ABZR87_RS06650at 1415.655 kb on + strand, within ABZR87_RS06650at 1415.656 kb on - strand, within ABZR87_RS06650at 1415.656 kb on - strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.693 kb on + strand, within ABZR87_RS06650at 1415.694 kb on - strand, within ABZR87_RS06650at 1415.700 kb on + strand, within ABZR87_RS06650at 1415.700 kb on + strand, within ABZR87_RS06650at 1415.700 kb on + strand, within ABZR87_RS06650at 1415.700 kb on + strand, within ABZR87_RS06650at 1415.701 kb on - strand, within ABZR87_RS06650at 1415.701 kb on - strand, within ABZR87_RS06650at 1415.701 kb on - strand, within ABZR87_RS06650at 1415.701 kb on - strand, within ABZR87_RS06650at 1415.731 kb on - strand, within ABZR87_RS06650at 1415.802 kb on + strand, within ABZR87_RS06650at 1415.802 kb on + strand, within ABZR87_RS06650at 1415.802 kb on + strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1415.803 kb on - strand, within ABZR87_RS06650at 1416.076 kb on - strandat 1416.078 kb on + strandat 1416.078 kb on + strandat 1416.078 kb on + strandat 1416.078 kb on + strandat 1416.079 kb on - strandat 1416.200 kb on + strand, within ABZR87_RS06655at 1416.200 kb on + strand, within ABZR87_RS06655at 1416.200 kb on + strand, within ABZR87_RS06655at 1416.200 kb on + strand, within ABZR87_RS06655at 1416.201 kb on - strand, within ABZR87_RS06655at 1416.201 kb on - strand, within ABZR87_RS06655at 1416.201 kb on - strand, within ABZR87_RS06655at 1416.236 kb on + strand, within ABZR87_RS06655at 1416.237 kb on - strand, within ABZR87_RS06655at 1416.248 kb on + strand, within ABZR87_RS06655

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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1,413,886 + -0.4
1,413,886 + -0.4
1,413,886 + +1.2
1,413,887 - -1.2
1,413,904 + -0.2
1,413,905 - -0.9
1,413,905 - -0.3
1,414,148 + ABZR87_RS06640 0.23 +0.0
1,414,148 + ABZR87_RS06640 0.23 +0.3
1,414,148 + ABZR87_RS06640 0.23 -0.5
1,414,148 + ABZR87_RS06640 0.23 -0.1
1,414,148 + ABZR87_RS06640 0.23 +0.3
1,414,148 + ABZR87_RS06640 0.23 -0.5
1,414,148 + ABZR87_RS06640 0.23 +1.1
1,414,149 - ABZR87_RS06640 0.23 +0.9
1,414,149 - ABZR87_RS06640 0.23 -1.0
1,414,228 + ABZR87_RS06640 0.34 +0.0
1,414,229 - ABZR87_RS06640 0.34 -1.1
1,414,229 - ABZR87_RS06640 0.34 -0.1
1,414,291 + ABZR87_RS06640 0.42 +0.1
1,414,291 + ABZR87_RS06640 0.42 +0.6
1,414,292 - ABZR87_RS06640 0.43 -0.3
1,414,297 + ABZR87_RS06640 0.43 +0.2
1,414,297 + ABZR87_RS06640 0.43 -0.2
1,414,297 + ABZR87_RS06640 0.43 +0.7
1,414,297 + ABZR87_RS06640 0.43 -0.4
1,414,298 - ABZR87_RS06640 0.43 +1.9
1,414,298 - ABZR87_RS06640 0.43 +0.2
1,414,298 - ABZR87_RS06640 0.43 -0.2
1,414,376 + ABZR87_RS06640 0.54 -0.6
1,414,432 + ABZR87_RS06640 0.62 +0.5
1,414,432 + ABZR87_RS06640 0.62 +0.1
1,414,432 + ABZR87_RS06640 0.62 -0.1
1,414,432 + ABZR87_RS06640 0.62 +0.3
1,414,433 - ABZR87_RS06640 0.62 +1.3
1,414,525 + ABZR87_RS06640 0.74 -1.0
1,414,525 + ABZR87_RS06640 0.74 +0.1
1,414,525 + ABZR87_RS06640 0.74 +0.2
1,414,526 - ABZR87_RS06640 0.74 +0.5
1,414,526 - ABZR87_RS06640 0.74 +0.1
1,414,633 + ABZR87_RS06640 0.89 -0.4
1,414,633 + ABZR87_RS06640 0.89 +0.4
1,414,651 + -0.4
1,414,652 - -0.7
1,414,652 - +0.2
1,414,663 + -0.4
1,414,663 + -0.3
1,414,664 - -0.1
1,414,702 + -0.1
1,414,702 + -1.1
1,414,702 + +0.2
1,414,703 - +0.2
1,414,703 - +0.6
1,414,774 + +0.6
1,414,774 + -0.4
1,414,774 + -0.6
1,414,774 + +0.1
1,414,774 + -1.6
1,414,775 - +3.1
1,414,775 - -0.3
1,414,775 - -0.2
1,414,775 - +0.3
1,414,775 - -0.1
1,414,920 + ABZR87_RS06645 0.12 +0.9
1,415,065 - ABZR87_RS06645 0.38 +1.1
1,415,065 - ABZR87_RS06645 0.38 +1.9
1,415,080 - ABZR87_RS06645 0.41 -1.5
1,415,105 + ABZR87_RS06645 0.45 -0.1
1,415,130 + ABZR87_RS06645 0.50 -0.7
1,415,131 - ABZR87_RS06645 0.50 -1.1
1,415,445 + -0.6
1,415,445 + -0.4
1,415,446 - -1.6
1,415,446 - -0.0
1,415,446 - +0.5
1,415,446 - +0.3
1,415,446 - -0.7
1,415,450 + -0.6
1,415,450 + -0.1
1,415,450 + -0.0
1,415,450 + +0.3
1,415,450 + -1.5
1,415,450 + -1.1
1,415,451 - +4.2
1,415,451 - -0.0
1,415,451 - -0.1
1,415,451 - -1.7
1,415,451 - -0.7
1,415,541 + -0.5
1,415,541 + +0.2
1,415,541 + -0.3
1,415,542 - +0.9
1,415,542 - -0.4
1,415,542 - +0.4
1,415,542 - +0.0
1,415,618 + ABZR87_RS06650 0.20 +0.3
1,415,618 + ABZR87_RS06650 0.20 -0.6
1,415,618 + ABZR87_RS06650 0.20 +0.6
1,415,618 + ABZR87_RS06650 0.20 -0.6
1,415,618 + ABZR87_RS06650 0.20 -0.6
1,415,618 + ABZR87_RS06650 0.20 +2.3
1,415,618 + ABZR87_RS06650 0.20 +0.2
1,415,619 - ABZR87_RS06650 0.21 -0.8
1,415,619 - ABZR87_RS06650 0.21 +0.2
1,415,619 - ABZR87_RS06650 0.21 -0.0
1,415,619 - ABZR87_RS06650 0.21 +1.9
1,415,619 - ABZR87_RS06650 0.21 -0.6
1,415,619 - ABZR87_RS06650 0.21 +0.4
1,415,619 - ABZR87_RS06650 0.21 -0.6
1,415,619 - ABZR87_RS06650 0.21 -1.7
1,415,655 + ABZR87_RS06650 0.28 -2.0
1,415,655 + ABZR87_RS06650 0.28 +0.3
1,415,655 + ABZR87_RS06650 0.28 +0.4
1,415,655 + ABZR87_RS06650 0.28 +0.1
1,415,656 - ABZR87_RS06650 0.28 +0.4
1,415,656 - ABZR87_RS06650 0.28 +0.0
1,415,693 + ABZR87_RS06650 0.35 -0.0
1,415,693 + ABZR87_RS06650 0.35 -0.6
1,415,693 + ABZR87_RS06650 0.35 -1.6
1,415,693 + ABZR87_RS06650 0.35 -0.9
1,415,693 + ABZR87_RS06650 0.35 +0.3
1,415,693 + ABZR87_RS06650 0.35 +0.7
1,415,693 + ABZR87_RS06650 0.35 -0.3
1,415,694 - ABZR87_RS06650 0.35 -0.0
1,415,700 + ABZR87_RS06650 0.36 -0.3
1,415,700 + ABZR87_RS06650 0.36 -1.6
1,415,700 + ABZR87_RS06650 0.36 +0.7
1,415,700 + ABZR87_RS06650 0.36 +0.2
1,415,701 - ABZR87_RS06650 0.36 +1.1
1,415,701 - ABZR87_RS06650 0.36 +1.9
1,415,701 - ABZR87_RS06650 0.36 -0.1
1,415,701 - ABZR87_RS06650 0.36 +0.4
1,415,731 - ABZR87_RS06650 0.42 +0.1
1,415,802 + ABZR87_RS06650 0.56 -0.0
1,415,802 + ABZR87_RS06650 0.56 +0.9
1,415,802 + ABZR87_RS06650 0.56 -1.5
1,415,803 - ABZR87_RS06650 0.56 -0.5
1,415,803 - ABZR87_RS06650 0.56 -0.1
1,415,803 - ABZR87_RS06650 0.56 -0.2
1,415,803 - ABZR87_RS06650 0.56 -0.2
1,415,803 - ABZR87_RS06650 0.56 +0.3
1,415,803 - ABZR87_RS06650 0.56 +1.0
1,415,803 - ABZR87_RS06650 0.56 -0.0
1,416,076 - +0.4
1,416,078 + +0.3
1,416,078 + +0.1
1,416,078 + +0.3
1,416,078 + +0.3
1,416,079 - +0.9
1,416,200 + ABZR87_RS06655 0.14 -0.9
1,416,200 + ABZR87_RS06655 0.14 -1.1
1,416,200 + ABZR87_RS06655 0.14 +0.9
1,416,200 + ABZR87_RS06655 0.14 -0.4
1,416,201 - ABZR87_RS06655 0.14 +0.4
1,416,201 - ABZR87_RS06655 0.14 +0.5
1,416,201 - ABZR87_RS06655 0.14 +0.3
1,416,236 + ABZR87_RS06655 0.21 -0.6
1,416,237 - ABZR87_RS06655 0.21 +0.4
1,416,248 + ABZR87_RS06655 0.23 +0.3

Or see this region's nucleotide sequence