Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05565 and ABZR87_RS05570 are separated by 239 nucleotides ABZR87_RS05570 and ABZR87_RS05575 are separated by 13 nucleotides ABZR87_RS05575 and ABZR87_RS05580 are separated by 89 nucleotides
ABZR87_RS05565: ABZR87_RS05565 - methionine adenosyltransferase, at 1,182,883 to 1,184,073
_RS05565
ABZR87_RS05570: ABZR87_RS05570 - lysophospholipid acyltransferase family protein, at 1,184,313 to 1,185,161
_RS05570
ABZR87_RS05575: ABZR87_RS05575 - lipid A biosynthesis lauroyl acyltransferase, at 1,185,175 to 1,186,068
_RS05575
ABZR87_RS05580: ABZR87_RS05580 - diaminopimelate epimerase, at 1,186,158 to 1,187,039
_RS05580
Position (kb)
1184
1185
1186 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1184.081 kb on - strand at 1184.081 kb on - strand at 1184.143 kb on - strand at 1184.143 kb on - strand at 1184.147 kb on - strand at 1184.147 kb on - strand at 1184.147 kb on - strand at 1184.147 kb on - strand at 1184.147 kb on - strand at 1184.147 kb on - strand at 1184.147 kb on - strand at 1184.203 kb on - strand at 1184.221 kb on - strand at 1184.224 kb on - strand at 1184.224 kb on - strand at 1184.225 kb on + strand at 1184.225 kb on + strand at 1184.225 kb on + strand at 1184.225 kb on + strand at 1184.225 kb on + strand at 1184.226 kb on - strand at 1184.226 kb on - strand at 1184.304 kb on + strand at 1184.304 kb on + strand at 1184.304 kb on + strand at 1184.305 kb on - strand at 1184.305 kb on - strand at 1184.325 kb on + strand at 1184.326 kb on - strand at 1184.326 kb on - strand at 1184.520 kb on + strand, within ABZR87_RS05570 at 1184.520 kb on + strand, within ABZR87_RS05570 at 1184.520 kb on + strand, within ABZR87_RS05570 at 1184.520 kb on + strand, within ABZR87_RS05570 at 1184.520 kb on + strand, within ABZR87_RS05570 at 1184.520 kb on + strand, within ABZR87_RS05570 at 1184.521 kb on - strand, within ABZR87_RS05570 at 1184.521 kb on - strand, within ABZR87_RS05570 at 1184.568 kb on + strand, within ABZR87_RS05570 at 1184.667 kb on + strand, within ABZR87_RS05570 at 1184.667 kb on + strand, within ABZR87_RS05570 at 1184.668 kb on - strand, within ABZR87_RS05570 at 1184.668 kb on - strand, within ABZR87_RS05570 at 1184.872 kb on + strand, within ABZR87_RS05570 at 1184.872 kb on + strand, within ABZR87_RS05570 at 1184.873 kb on - strand, within ABZR87_RS05570 at 1184.901 kb on + strand, within ABZR87_RS05570 at 1184.902 kb on - strand, within ABZR87_RS05570 at 1184.902 kb on - strand, within ABZR87_RS05570 at 1184.902 kb on - strand, within ABZR87_RS05570 at 1184.903 kb on + strand, within ABZR87_RS05570 at 1184.903 kb on + strand, within ABZR87_RS05570 at 1184.903 kb on + strand, within ABZR87_RS05570 at 1184.903 kb on + strand, within ABZR87_RS05570 at 1184.903 kb on + strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1184.904 kb on - strand, within ABZR87_RS05570 at 1185.099 kb on + strand at 1185.099 kb on + strand at 1185.099 kb on + strand at 1185.099 kb on + strand at 1185.099 kb on + strand at 1185.099 kb on + strand at 1185.100 kb on - strand at 1185.100 kb on - strand at 1185.111 kb on + strand at 1185.111 kb on + strand at 1185.111 kb on + strand at 1185.111 kb on + strand at 1185.111 kb on + strand at 1185.112 kb on - strand at 1185.112 kb on - strand at 1185.112 kb on - strand at 1185.113 kb on + strand at 1185.114 kb on - strand at 1185.120 kb on + strand at 1185.120 kb on + strand at 1185.120 kb on + strand at 1185.121 kb on - strand at 1185.174 kb on + strand at 1185.174 kb on + strand at 1185.175 kb on - strand at 1186.063 kb on + strand at 1186.063 kb on + strand at 1186.063 kb on + strand at 1186.063 kb on + strand at 1186.063 kb on + strand at 1186.063 kb on + strand at 1186.063 kb on + strand at 1186.064 kb on - strand at 1186.064 kb on - strand at 1186.064 kb on - strand at 1186.064 kb on - strand at 1186.064 kb on - strand at 1186.064 kb on - strand at 1186.064 kb on - strand at 1186.109 kb on + strand at 1186.109 kb on + strand at 1186.109 kb on + strand at 1186.109 kb on + strand at 1186.109 kb on + strand at 1186.109 kb on + strand at 1186.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,184,081 - -0.5 1,184,081 - -0.2 1,184,143 - +1.0 1,184,143 - +0.2 1,184,147 - +0.3 1,184,147 - -0.5 1,184,147 - -0.3 1,184,147 - +0.0 1,184,147 - -0.5 1,184,147 - +1.3 1,184,147 - +0.5 1,184,203 - -0.9 1,184,221 - +0.3 1,184,224 - +0.1 1,184,224 - -0.6 1,184,225 + +1.9 1,184,225 + -0.6 1,184,225 + +0.3 1,184,225 + -0.6 1,184,225 + -0.2 1,184,226 - -1.5 1,184,226 - -0.1 1,184,304 + -0.2 1,184,304 + -2.5 1,184,304 + +0.1 1,184,305 - +1.5 1,184,305 - +0.7 1,184,325 + -1.0 1,184,326 - -1.2 1,184,326 - +0.4 1,184,520 + ABZR87_RS05570 0.24 -0.9 1,184,520 + ABZR87_RS05570 0.24 -0.4 1,184,520 + ABZR87_RS05570 0.24 -1.3 1,184,520 + ABZR87_RS05570 0.24 -0.4 1,184,520 + ABZR87_RS05570 0.24 -1.6 1,184,520 + ABZR87_RS05570 0.24 +1.0 1,184,521 - ABZR87_RS05570 0.24 -0.2 1,184,521 - ABZR87_RS05570 0.24 -2.0 1,184,568 + ABZR87_RS05570 0.30 +1.1 1,184,667 + ABZR87_RS05570 0.42 -0.6 1,184,667 + ABZR87_RS05570 0.42 -0.6 1,184,668 - ABZR87_RS05570 0.42 +0.9 1,184,668 - ABZR87_RS05570 0.42 +0.4 1,184,872 + ABZR87_RS05570 0.66 -0.1 1,184,872 + ABZR87_RS05570 0.66 +0.4 1,184,873 - ABZR87_RS05570 0.66 -0.9 1,184,901 + ABZR87_RS05570 0.69 -0.5 1,184,902 - ABZR87_RS05570 0.69 -1.3 1,184,902 - ABZR87_RS05570 0.69 +0.7 1,184,902 - ABZR87_RS05570 0.69 -0.1 1,184,903 + ABZR87_RS05570 0.69 -1.3 1,184,903 + ABZR87_RS05570 0.69 -1.2 1,184,903 + ABZR87_RS05570 0.69 +0.1 1,184,903 + ABZR87_RS05570 0.69 -2.9 1,184,903 + ABZR87_RS05570 0.69 -1.0 1,184,904 - ABZR87_RS05570 0.70 -0.5 1,184,904 - ABZR87_RS05570 0.70 -0.9 1,184,904 - ABZR87_RS05570 0.70 -1.8 1,184,904 - ABZR87_RS05570 0.70 +0.6 1,184,904 - ABZR87_RS05570 0.70 -0.8 1,184,904 - ABZR87_RS05570 0.70 -0.6 1,184,904 - ABZR87_RS05570 0.70 +0.2 1,184,904 - ABZR87_RS05570 0.70 -1.8 1,184,904 - ABZR87_RS05570 0.70 -0.1 1,185,099 + -0.7 1,185,099 + +1.5 1,185,099 + -0.6 1,185,099 + -0.1 1,185,099 + +0.1 1,185,099 + -0.6 1,185,100 - +1.1 1,185,100 - +0.3 1,185,111 + +0.3 1,185,111 + -1.1 1,185,111 + -0.9 1,185,111 + -0.3 1,185,111 + -0.8 1,185,112 - +1.1 1,185,112 - +0.1 1,185,112 - -1.1 1,185,113 + -0.1 1,185,114 - +0.6 1,185,120 + -0.7 1,185,120 + -1.5 1,185,120 + +0.9 1,185,121 - -2.4 1,185,174 + -0.3 1,185,174 + +0.9 1,185,175 - -1.1 1,186,063 + +1.5 1,186,063 + +0.2 1,186,063 + +1.9 1,186,063 + +0.9 1,186,063 + -0.1 1,186,063 + -0.9 1,186,063 + +0.5 1,186,064 - -0.1 1,186,064 - +0.2 1,186,064 - -0.0 1,186,064 - +0.1 1,186,064 - +0.6 1,186,064 - -2.1 1,186,064 - -1.5 1,186,109 + +0.6 1,186,109 + +0.3 1,186,109 + +0.3 1,186,109 + +1.1 1,186,109 + +0.7 1,186,109 + +0.8 1,186,110 - +1.2
Or see this region's nucleotide sequence