Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05140 and ABZR87_RS05145 are separated by 142 nucleotides ABZR87_RS05145 and ABZR87_RS05150 are separated by 46 nucleotides ABZR87_RS05150 and ABZR87_RS05155 are separated by 0 nucleotides ABZR87_RS05155 and ABZR87_RS05160 are separated by 29 nucleotides ABZR87_RS05160 and ABZR87_RS05165 are separated by 42 nucleotides
ABZR87_RS05140: ABZR87_RS05140 - ATP-binding protein, at 1,082,156 to 1,083,502
_RS05140
ABZR87_RS05145: ABZR87_RS05145 - copper chaperone PCu(A)C, at 1,083,645 to 1,084,142
_RS05145
ABZR87_RS05150: ABZR87_RS05150 - hypothetical protein, at 1,084,189 to 1,084,410
_RS05150
ABZR87_RS05155: ABZR87_RS05155 - cysteine-rich CWC family protein, at 1,084,411 to 1,084,593
_RS05155
ABZR87_RS05160: ABZR87_RS05160 - zf-HC2 domain-containing protein, at 1,084,623 to 1,084,835
_RS05160
ABZR87_RS05165: ABZR87_RS05165 - sigma-70 family RNA polymerase sigma factor, at 1,084,878 to 1,085,471
_RS05165
Position (kb)
1083
1084
1085 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1083.076 kb on - strand, within ABZR87_RS05140 at 1083.097 kb on - strand, within ABZR87_RS05140 at 1083.272 kb on - strand, within ABZR87_RS05140 at 1083.452 kb on + strand at 1083.452 kb on + strand at 1083.453 kb on - strand at 1083.453 kb on - strand at 1083.515 kb on + strand at 1083.515 kb on + strand at 1083.516 kb on - strand at 1083.584 kb on + strand at 1083.584 kb on + strand at 1083.584 kb on + strand at 1083.584 kb on + strand at 1083.584 kb on + strand at 1083.585 kb on - strand at 1083.585 kb on - strand at 1083.585 kb on - strand at 1083.608 kb on + strand at 1083.609 kb on - strand at 1083.963 kb on + strand, within ABZR87_RS05145 at 1084.174 kb on + strand at 1084.174 kb on + strand at 1084.174 kb on + strand at 1084.174 kb on + strand at 1084.174 kb on + strand at 1084.174 kb on + strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.175 kb on - strand at 1084.194 kb on + strand at 1084.195 kb on - strand at 1084.195 kb on - strand at 1084.195 kb on - strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.600 kb on + strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.601 kb on - strand at 1084.811 kb on + strand, within ABZR87_RS05160 at 1084.811 kb on + strand, within ABZR87_RS05160 at 1084.811 kb on + strand, within ABZR87_RS05160 at 1084.812 kb on - strand, within ABZR87_RS05160 at 1084.812 kb on - strand, within ABZR87_RS05160 at 1084.812 kb on - strand, within ABZR87_RS05160 at 1084.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,083,076 - ABZR87_RS05140 0.68 +1.8 1,083,097 - ABZR87_RS05140 0.70 +0.8 1,083,272 - ABZR87_RS05140 0.83 +0.2 1,083,452 + +0.4 1,083,452 + -1.3 1,083,453 - -0.1 1,083,453 - +0.8 1,083,515 + +0.9 1,083,515 + -1.2 1,083,516 - -0.2 1,083,584 + -0.0 1,083,584 + -0.3 1,083,584 + +0.3 1,083,584 + -0.2 1,083,584 + -1.2 1,083,585 - -0.3 1,083,585 - -0.5 1,083,585 - -0.2 1,083,608 + -1.2 1,083,609 - +0.5 1,083,963 + ABZR87_RS05145 0.64 -0.9 1,084,174 + -1.6 1,084,174 + -1.2 1,084,174 + +0.7 1,084,174 + +0.6 1,084,174 + +0.4 1,084,174 + -0.1 1,084,175 - +0.5 1,084,175 - -0.0 1,084,175 - -1.4 1,084,175 - -0.7 1,084,175 - -0.6 1,084,175 - +0.8 1,084,175 - -0.6 1,084,175 - -0.5 1,084,175 - +0.2 1,084,175 - -0.4 1,084,175 - +0.3 1,084,194 + +0.2 1,084,195 - +0.3 1,084,195 - +0.3 1,084,195 - +0.4 1,084,600 + -1.8 1,084,600 + +0.7 1,084,600 + +0.1 1,084,600 + -0.3 1,084,600 + -0.3 1,084,600 + +1.0 1,084,600 + -0.2 1,084,600 + -0.0 1,084,600 + -0.7 1,084,600 + -0.3 1,084,600 + -1.2 1,084,600 + -0.6 1,084,600 + -0.6 1,084,601 - -0.5 1,084,601 - -0.1 1,084,601 - -1.1 1,084,601 - +0.2 1,084,601 - -0.0 1,084,601 - -0.0 1,084,601 - +1.4 1,084,601 - -0.1 1,084,601 - +0.4 1,084,601 - -0.3 1,084,601 - +0.4 1,084,601 - +0.2 1,084,811 + ABZR87_RS05160 0.88 +0.4 1,084,811 + ABZR87_RS05160 0.88 -0.7 1,084,811 + ABZR87_RS05160 0.88 -1.3 1,084,812 - ABZR87_RS05160 0.89 -0.4 1,084,812 - ABZR87_RS05160 0.89 +0.6 1,084,812 - ABZR87_RS05160 0.89 +1.6 1,084,851 + -1.7
Or see this region's nucleotide sequence