Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04855 and ABZR87_RS04860 are separated by 55 nucleotides ABZR87_RS04860 and ABZR87_RS04865 are separated by 10 nucleotides ABZR87_RS04865 and ABZR87_RS04870 are separated by 29 nucleotides ABZR87_RS04870 and ABZR87_RS04875 are separated by 4 nucleotides
ABZR87_RS04855: ABZR87_RS04855 - adenosylhomocysteinase, at 1,019,576 to 1,021,000
_RS04855
ABZR87_RS04860: ABZR87_RS04860 - phage holin family protein, at 1,021,056 to 1,021,400
_RS04860
ABZR87_RS04865: ABZR87_RS04865 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,021,411 to 1,022,241
_RS04865
ABZR87_RS04870: ABZR87_RS04870 - TfoX/Sxy family protein, at 1,022,271 to 1,022,729
_RS04870
ABZR87_RS04875: ABZR87_RS04875 - pyridoxamine 5'-phosphate oxidase family protein, at 1,022,734 to 1,023,348
_RS04875
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1020.998 kb on + strand at 1020.998 kb on + strand at 1020.999 kb on - strand at 1020.999 kb on - strand at 1020.999 kb on - strand at 1021.006 kb on - strand at 1021.006 kb on - strand at 1021.110 kb on + strand, within ABZR87_RS04860 at 1021.110 kb on + strand, within ABZR87_RS04860 at 1021.111 kb on - strand, within ABZR87_RS04860 at 1021.111 kb on - strand, within ABZR87_RS04860 at 1021.111 kb on - strand, within ABZR87_RS04860 at 1021.350 kb on + strand, within ABZR87_RS04860 at 1021.350 kb on + strand, within ABZR87_RS04860 at 1021.350 kb on + strand, within ABZR87_RS04860 at 1021.351 kb on - strand, within ABZR87_RS04860 at 1021.351 kb on - strand, within ABZR87_RS04860 at 1021.351 kb on - strand, within ABZR87_RS04860 at 1021.398 kb on + strand at 1021.398 kb on + strand at 1021.398 kb on + strand at 1021.398 kb on + strand at 1021.399 kb on - strand at 1021.399 kb on - strand at 1021.662 kb on + strand, within ABZR87_RS04865 at 1021.662 kb on + strand, within ABZR87_RS04865 at 1021.662 kb on + strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.663 kb on - strand, within ABZR87_RS04865 at 1021.666 kb on + strand, within ABZR87_RS04865 at 1021.825 kb on + strand, within ABZR87_RS04865 at 1021.826 kb on - strand, within ABZR87_RS04865 at 1021.912 kb on + strand, within ABZR87_RS04865 at 1021.912 kb on + strand, within ABZR87_RS04865 at 1021.912 kb on + strand, within ABZR87_RS04865 at 1021.913 kb on - strand, within ABZR87_RS04865 at 1021.913 kb on - strand, within ABZR87_RS04865 at 1021.933 kb on + strand, within ABZR87_RS04865 at 1022.185 kb on + strand at 1022.186 kb on - strand at 1022.186 kb on - strand at 1022.239 kb on + strand at 1022.382 kb on + strand, within ABZR87_RS04870 at 1022.382 kb on + strand, within ABZR87_RS04870 at 1022.386 kb on - strand, within ABZR87_RS04870 at 1022.386 kb on - strand, within ABZR87_RS04870 at 1022.427 kb on + strand, within ABZR87_RS04870 at 1022.427 kb on + strand, within ABZR87_RS04870 at 1022.427 kb on + strand, within ABZR87_RS04870 at 1022.427 kb on + strand, within ABZR87_RS04870 at 1022.427 kb on + strand, within ABZR87_RS04870 at 1022.427 kb on + strand, within ABZR87_RS04870 at 1022.428 kb on - strand, within ABZR87_RS04870 at 1022.428 kb on - strand, within ABZR87_RS04870 at 1022.428 kb on - strand, within ABZR87_RS04870 at 1022.491 kb on - strand, within ABZR87_RS04870 at 1022.491 kb on - strand, within ABZR87_RS04870 at 1022.491 kb on - strand, within ABZR87_RS04870 at 1022.526 kb on + strand, within ABZR87_RS04870 at 1022.527 kb on - strand, within ABZR87_RS04870 at 1022.527 kb on - strand, within ABZR87_RS04870 at 1022.527 kb on - strand, within ABZR87_RS04870 at 1022.527 kb on - strand, within ABZR87_RS04870 at 1022.666 kb on + strand, within ABZR87_RS04870 at 1022.666 kb on + strand, within ABZR87_RS04870 at 1022.667 kb on - strand, within ABZR87_RS04870 at 1022.667 kb on - strand, within ABZR87_RS04870 at 1022.738 kb on + strand at 1022.738 kb on + strand at 1022.739 kb on - strand at 1022.739 kb on - strand at 1022.777 kb on + strand at 1022.777 kb on + strand at 1022.777 kb on + strand at 1022.778 kb on - strand at 1022.796 kb on + strand, within ABZR87_RS04875 at 1022.797 kb on - strand, within ABZR87_RS04875 at 1022.797 kb on - strand, within ABZR87_RS04875 at 1022.797 kb on - strand, within ABZR87_RS04875 at 1022.797 kb on - strand, within ABZR87_RS04875 at 1022.797 kb on - strand, within ABZR87_RS04875 at 1022.909 kb on + strand, within ABZR87_RS04875 at 1022.909 kb on + strand, within ABZR87_RS04875 at 1022.910 kb on - strand, within ABZR87_RS04875 at 1022.910 kb on - strand, within ABZR87_RS04875 at 1022.910 kb on - strand, within ABZR87_RS04875 at 1022.927 kb on - strand, within ABZR87_RS04875 at 1023.078 kb on + strand, within ABZR87_RS04875 at 1023.079 kb on - strand, within ABZR87_RS04875
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 1,020,998 + +0.8 1,020,998 + +0.8 1,020,999 - -0.9 1,020,999 - -1.0 1,020,999 - -0.4 1,021,006 - +0.1 1,021,006 - -0.0 1,021,110 + ABZR87_RS04860 0.16 -0.2 1,021,110 + ABZR87_RS04860 0.16 -1.2 1,021,111 - ABZR87_RS04860 0.16 +0.0 1,021,111 - ABZR87_RS04860 0.16 -0.2 1,021,111 - ABZR87_RS04860 0.16 -2.2 1,021,350 + ABZR87_RS04860 0.85 +0.1 1,021,350 + ABZR87_RS04860 0.85 +0.1 1,021,350 + ABZR87_RS04860 0.85 -0.9 1,021,351 - ABZR87_RS04860 0.86 +0.6 1,021,351 - ABZR87_RS04860 0.86 -0.2 1,021,351 - ABZR87_RS04860 0.86 +0.2 1,021,398 + -0.3 1,021,398 + -0.4 1,021,398 + +1.2 1,021,398 + +0.7 1,021,399 - -1.2 1,021,399 - -0.1 1,021,662 + ABZR87_RS04865 0.30 -0.8 1,021,662 + ABZR87_RS04865 0.30 -0.3 1,021,662 + ABZR87_RS04865 0.30 -2.0 1,021,663 - ABZR87_RS04865 0.30 -2.5 1,021,663 - ABZR87_RS04865 0.30 +0.3 1,021,663 - ABZR87_RS04865 0.30 -0.2 1,021,663 - ABZR87_RS04865 0.30 -1.8 1,021,663 - ABZR87_RS04865 0.30 -0.4 1,021,663 - ABZR87_RS04865 0.30 +0.1 1,021,663 - ABZR87_RS04865 0.30 +0.0 1,021,663 - ABZR87_RS04865 0.30 -1.0 1,021,663 - ABZR87_RS04865 0.30 +1.8 1,021,663 - ABZR87_RS04865 0.30 +0.2 1,021,666 + ABZR87_RS04865 0.31 -1.8 1,021,825 + ABZR87_RS04865 0.50 -1.1 1,021,826 - ABZR87_RS04865 0.50 +1.4 1,021,912 + ABZR87_RS04865 0.60 -0.5 1,021,912 + ABZR87_RS04865 0.60 -1.6 1,021,912 + ABZR87_RS04865 0.60 +0.2 1,021,913 - ABZR87_RS04865 0.60 -1.2 1,021,913 - ABZR87_RS04865 0.60 +0.2 1,021,933 + ABZR87_RS04865 0.63 -0.8 1,022,185 + -0.0 1,022,186 - -0.0 1,022,186 - -0.8 1,022,239 + -0.3 1,022,382 + ABZR87_RS04870 0.24 +0.0 1,022,382 + ABZR87_RS04870 0.24 -0.8 1,022,386 - ABZR87_RS04870 0.25 +1.0 1,022,386 - ABZR87_RS04870 0.25 -0.2 1,022,427 + ABZR87_RS04870 0.34 +0.1 1,022,427 + ABZR87_RS04870 0.34 -1.0 1,022,427 + ABZR87_RS04870 0.34 -0.6 1,022,427 + ABZR87_RS04870 0.34 -0.4 1,022,427 + ABZR87_RS04870 0.34 +0.1 1,022,427 + ABZR87_RS04870 0.34 -0.4 1,022,428 - ABZR87_RS04870 0.34 +0.4 1,022,428 - ABZR87_RS04870 0.34 +0.4 1,022,428 - ABZR87_RS04870 0.34 +0.1 1,022,491 - ABZR87_RS04870 0.48 +0.1 1,022,491 - ABZR87_RS04870 0.48 -1.1 1,022,491 - ABZR87_RS04870 0.48 -0.1 1,022,526 + ABZR87_RS04870 0.56 -0.3 1,022,527 - ABZR87_RS04870 0.56 +1.1 1,022,527 - ABZR87_RS04870 0.56 +0.1 1,022,527 - ABZR87_RS04870 0.56 -1.0 1,022,527 - ABZR87_RS04870 0.56 -0.1 1,022,666 + ABZR87_RS04870 0.86 -0.3 1,022,666 + ABZR87_RS04870 0.86 +0.8 1,022,667 - ABZR87_RS04870 0.86 -0.2 1,022,667 - ABZR87_RS04870 0.86 -0.3 1,022,738 + -1.1 1,022,738 + +1.0 1,022,739 - -1.0 1,022,739 - +0.2 1,022,777 + -1.1 1,022,777 + +0.3 1,022,777 + -0.4 1,022,778 - +0.2 1,022,796 + ABZR87_RS04875 0.10 -0.6 1,022,797 - ABZR87_RS04875 0.10 +0.0 1,022,797 - ABZR87_RS04875 0.10 +0.4 1,022,797 - ABZR87_RS04875 0.10 +0.3 1,022,797 - ABZR87_RS04875 0.10 -0.4 1,022,797 - ABZR87_RS04875 0.10 -0.1 1,022,909 + ABZR87_RS04875 0.28 -0.1 1,022,909 + ABZR87_RS04875 0.28 -0.1 1,022,910 - ABZR87_RS04875 0.29 +0.4 1,022,910 - ABZR87_RS04875 0.29 -0.9 1,022,910 - ABZR87_RS04875 0.29 +0.1 1,022,927 - ABZR87_RS04875 0.31 +0.2 1,023,078 + ABZR87_RS04875 0.56 -1.5 1,023,079 - ABZR87_RS04875 0.56 +0.8
Or see this region's nucleotide sequence