Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04275 and ABZR87_RS04280 are separated by 76 nucleotides ABZR87_RS04280 and ABZR87_RS04285 are separated by 8 nucleotides ABZR87_RS04285 and ABZR87_RS04290 are separated by 16 nucleotides
ABZR87_RS04275: ABZR87_RS04275 - DUF3717 domain-containing protein, at 892,070 to 892,297
_RS04275
ABZR87_RS04280: ABZR87_RS04280 - response regulator transcription factor, at 892,374 to 893,084
_RS04280
ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766
_RS04285
ABZR87_RS04290: ABZR87_RS04290 - SET domain-containing protein-lysine N-methyltransferase, at 894,783 to 895,322
_RS04290
Position (kb) 893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.665 kb on + strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 893.055 kb on + strand at 893.082 kb on + strand at 893.082 kb on + strand at 893.082 kb on + strand at 893.083 kb on - strand at 893.240 kb on + strand at 893.240 kb on + strand at 893.241 kb on - strand at 893.241 kb on - strand at 893.241 kb on - strand at 893.258 kb on + strand at 893.258 kb on + strand at 893.259 kb on - strand at 893.357 kb on + strand, within ABZR87_RS04285 at 893.357 kb on + strand, within ABZR87_RS04285 at 893.357 kb on + strand, within ABZR87_RS04285 at 893.358 kb on - strand, within ABZR87_RS04285 at 893.414 kb on + strand, within ABZR87_RS04285 at 893.414 kb on + strand, within ABZR87_RS04285 at 893.415 kb on - strand, within ABZR87_RS04285 at 893.415 kb on - strand, within ABZR87_RS04285 at 893.415 kb on - strand, within ABZR87_RS04285 at 893.471 kb on + strand, within ABZR87_RS04285 at 893.472 kb on - strand, within ABZR87_RS04285 at 893.513 kb on + strand, within ABZR87_RS04285 at 893.513 kb on + strand, within ABZR87_RS04285 at 893.514 kb on - strand, within ABZR87_RS04285 at 893.514 kb on - strand, within ABZR87_RS04285 at 894.118 kb on - strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.443 kb on + strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.444 kb on - strand, within ABZR87_RS04285 at 894.644 kb on - strand at 894.764 kb on + strand at 894.784 kb on + strand at 894.904 kb on + strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.905 kb on - strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.910 kb on + strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 894.911 kb on - strand, within ABZR87_RS04290 at 895.033 kb on + strand, within ABZR87_RS04290 at 895.034 kb on - strand, within ABZR87_RS04290 at 895.072 kb on + strand, within ABZR87_RS04290 at 895.072 kb on + strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.073 kb on - strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.150 kb on + strand, within ABZR87_RS04290 at 895.151 kb on - strand, within ABZR87_RS04290 at 895.151 kb on - strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.192 kb on + strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.193 kb on - strand, within ABZR87_RS04290 at 895.337 kb on + strand at 895.337 kb on + strand at 895.338 kb on - strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.378 kb on + strand at 895.379 kb on - strand at 895.379 kb on - strand at 895.379 kb on - strand at 895.461 kb on + strand at 895.462 kb on - strand at 895.462 kb on - strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.562 kb on + strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.620 kb on + strand at 895.621 kb on - strand at 895.634 kb on + strand at 895.638 kb on + strand at 895.652 kb on - strand at 895.661 kb on + strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.668 kb on + strand at 895.668 kb on + strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.672 kb on - strand at 895.672 kb on - strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.680 kb on + strand at 895.681 kb on + strand at 895.681 kb on - strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.698 kb on + strand at 895.698 kb on + strand at 895.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 892,101 + ABZR87_RS04275 0.14 +0.1 892,101 + ABZR87_RS04275 0.14 -0.3 892,101 + ABZR87_RS04275 0.14 -0.1 892,101 + ABZR87_RS04275 0.14 +0.4 892,101 + ABZR87_RS04275 0.14 -0.3 892,102 - ABZR87_RS04275 0.14 +0.1 892,102 - ABZR87_RS04275 0.14 -0.5 892,157 + ABZR87_RS04275 0.38 -0.6 892,157 + ABZR87_RS04275 0.38 +0.7 892,157 + ABZR87_RS04275 0.38 -0.4 892,157 + ABZR87_RS04275 0.38 +0.8 892,157 + ABZR87_RS04275 0.38 +0.6 892,157 + ABZR87_RS04275 0.38 -0.3 892,157 + ABZR87_RS04275 0.38 +0.1 892,157 + ABZR87_RS04275 0.38 +0.3 892,157 + ABZR87_RS04275 0.38 -0.3 892,157 + ABZR87_RS04275 0.38 +0.1 892,158 - ABZR87_RS04275 0.39 +0.3 892,158 - ABZR87_RS04275 0.39 -0.7 892,158 - ABZR87_RS04275 0.39 +0.5 892,158 - ABZR87_RS04275 0.39 -0.0 892,158 - ABZR87_RS04275 0.39 +1.0 892,158 - ABZR87_RS04275 0.39 -0.3 892,173 + ABZR87_RS04275 0.45 +0.0 892,173 + ABZR87_RS04275 0.45 -0.5 892,174 - ABZR87_RS04275 0.46 -1.2 892,174 - ABZR87_RS04275 0.46 +0.1 892,174 - ABZR87_RS04275 0.46 +0.3 892,308 + +0.5 892,308 + -1.2 892,308 + -1.5 892,308 + +0.2 892,308 + +0.1 892,309 - -0.1 892,309 - +0.0 892,309 - -1.1 892,309 - -1.4 892,309 - -0.9 892,309 - +0.4 892,309 - +0.2 892,665 + ABZR87_RS04280 0.41 +0.9 892,666 - ABZR87_RS04280 0.41 +0.5 892,666 - ABZR87_RS04280 0.41 +0.2 892,666 - ABZR87_RS04280 0.41 -1.0 892,666 - ABZR87_RS04280 0.41 -0.0 892,666 - ABZR87_RS04280 0.41 -0.1 892,666 - ABZR87_RS04280 0.41 +0.9 892,986 + ABZR87_RS04280 0.86 +0.9 892,986 + ABZR87_RS04280 0.86 -0.3 892,986 + ABZR87_RS04280 0.86 +0.5 892,986 + ABZR87_RS04280 0.86 -1.1 892,986 + ABZR87_RS04280 0.86 -0.4 892,986 + ABZR87_RS04280 0.86 +0.3 892,986 + ABZR87_RS04280 0.86 +0.7 892,986 + ABZR87_RS04280 0.86 -0.0 892,986 + ABZR87_RS04280 0.86 -0.6 892,986 + ABZR87_RS04280 0.86 -0.5 892,987 - ABZR87_RS04280 0.86 +0.8 892,987 - ABZR87_RS04280 0.86 -0.7 892,987 - ABZR87_RS04280 0.86 -0.0 892,987 - ABZR87_RS04280 0.86 +0.1 892,987 - ABZR87_RS04280 0.86 +0.2 892,987 - ABZR87_RS04280 0.86 -0.2 892,987 - ABZR87_RS04280 0.86 -2.0 892,987 - ABZR87_RS04280 0.86 +0.8 892,987 - ABZR87_RS04280 0.86 +0.3 892,987 - ABZR87_RS04280 0.86 +0.3 892,987 - ABZR87_RS04280 0.86 +0.2 892,987 - ABZR87_RS04280 0.86 +0.6 892,987 - ABZR87_RS04280 0.86 +0.7 892,987 - ABZR87_RS04280 0.86 +0.4 892,987 - ABZR87_RS04280 0.86 -0.8 893,055 + +0.1 893,082 + -0.8 893,082 + -0.2 893,082 + +0.2 893,083 - +0.7 893,240 + -2.4 893,240 + +0.3 893,241 - -0.2 893,241 - +0.2 893,241 - -0.5 893,258 + +0.2 893,258 + +0.2 893,259 - +0.8 893,357 + ABZR87_RS04285 0.16 -0.9 893,357 + ABZR87_RS04285 0.16 -0.1 893,357 + ABZR87_RS04285 0.16 +0.2 893,358 - ABZR87_RS04285 0.16 +0.4 893,414 + ABZR87_RS04285 0.19 +0.0 893,414 + ABZR87_RS04285 0.19 +0.9 893,415 - ABZR87_RS04285 0.19 -0.4 893,415 - ABZR87_RS04285 0.19 +0.2 893,415 - ABZR87_RS04285 0.19 -0.2 893,471 + ABZR87_RS04285 0.23 +0.1 893,472 - ABZR87_RS04285 0.23 +0.4 893,513 + ABZR87_RS04285 0.25 -0.9 893,513 + ABZR87_RS04285 0.25 +0.1 893,514 - ABZR87_RS04285 0.25 +0.1 893,514 - ABZR87_RS04285 0.25 -0.2 894,118 - ABZR87_RS04285 0.61 +0.3 894,443 + ABZR87_RS04285 0.81 -0.1 894,443 + ABZR87_RS04285 0.81 -0.8 894,443 + ABZR87_RS04285 0.81 -0.9 894,443 + ABZR87_RS04285 0.81 +1.2 894,443 + ABZR87_RS04285 0.81 -0.2 894,444 - ABZR87_RS04285 0.81 -0.7 894,444 - ABZR87_RS04285 0.81 +0.7 894,444 - ABZR87_RS04285 0.81 +0.4 894,644 - -0.4 894,764 + +0.1 894,784 + +0.8 894,904 + ABZR87_RS04290 0.22 -0.1 894,905 - ABZR87_RS04290 0.23 +0.2 894,905 - ABZR87_RS04290 0.23 -0.3 894,905 - ABZR87_RS04290 0.23 +0.8 894,905 - ABZR87_RS04290 0.23 +0.4 894,905 - ABZR87_RS04290 0.23 +0.3 894,910 + ABZR87_RS04290 0.24 -0.5 894,910 + ABZR87_RS04290 0.24 -0.7 894,910 + ABZR87_RS04290 0.24 -0.0 894,911 - ABZR87_RS04290 0.24 +0.0 894,911 - ABZR87_RS04290 0.24 +0.0 894,911 - ABZR87_RS04290 0.24 -0.4 894,911 - ABZR87_RS04290 0.24 -0.3 894,911 - ABZR87_RS04290 0.24 +0.8 894,911 - ABZR87_RS04290 0.24 -0.3 894,911 - ABZR87_RS04290 0.24 +0.9 895,033 + ABZR87_RS04290 0.46 -0.9 895,034 - ABZR87_RS04290 0.46 -0.3 895,072 + ABZR87_RS04290 0.54 -0.1 895,072 + ABZR87_RS04290 0.54 +0.2 895,073 - ABZR87_RS04290 0.54 -0.0 895,073 - ABZR87_RS04290 0.54 -0.5 895,073 - ABZR87_RS04290 0.54 -0.6 895,073 - ABZR87_RS04290 0.54 +0.5 895,073 - ABZR87_RS04290 0.54 -0.8 895,150 + ABZR87_RS04290 0.68 -0.5 895,150 + ABZR87_RS04290 0.68 +0.5 895,150 + ABZR87_RS04290 0.68 -0.4 895,150 + ABZR87_RS04290 0.68 +0.1 895,151 - ABZR87_RS04290 0.68 +0.1 895,151 - ABZR87_RS04290 0.68 +0.5 895,192 + ABZR87_RS04290 0.76 -0.4 895,192 + ABZR87_RS04290 0.76 +1.0 895,192 + ABZR87_RS04290 0.76 -0.1 895,192 + ABZR87_RS04290 0.76 -0.2 895,192 + ABZR87_RS04290 0.76 -1.0 895,192 + ABZR87_RS04290 0.76 +0.1 895,193 - ABZR87_RS04290 0.76 +0.6 895,193 - ABZR87_RS04290 0.76 -1.0 895,193 - ABZR87_RS04290 0.76 +1.8 895,193 - ABZR87_RS04290 0.76 +0.1 895,193 - ABZR87_RS04290 0.76 -1.0 895,193 - ABZR87_RS04290 0.76 -0.3 895,193 - ABZR87_RS04290 0.76 -0.1 895,193 - ABZR87_RS04290 0.76 -0.8 895,193 - ABZR87_RS04290 0.76 -0.1 895,337 + +0.0 895,337 + +0.3 895,338 - -0.0 895,378 + -1.0 895,378 + -0.7 895,378 + -1.2 895,378 + -1.8 895,379 - -0.1 895,379 - -0.7 895,379 - +0.0 895,461 + +0.1 895,462 - -0.4 895,462 - +0.6 895,465 + -2.4 895,465 + -0.8 895,465 + +0.1 895,465 + -1.6 895,562 + -2.4 895,563 - +0.1 895,563 - +0.0 895,563 - +0.9 895,563 - -0.7 895,563 - -2.1 895,563 - +0.2 895,620 + +0.6 895,621 - -0.0 895,634 + -0.3 895,638 + +0.0 895,652 - +0.2 895,661 + -0.4 895,662 - +0.1 895,662 - -0.0 895,665 + -0.1 895,665 + -0.1 895,665 + -3.1 895,668 + +0.5 895,668 + -0.1 895,669 - -0.3 895,669 - +0.2 895,669 - -0.6 895,669 - -0.2 895,669 - -0.1 895,671 + -0.4 895,671 + +0.2 895,671 + -0.9 895,671 + -0.2 895,671 + +0.2 895,671 + +0.2 895,672 - +0.8 895,672 - -0.8 895,674 + +1.8 895,674 + +0.1 895,674 + -1.4 895,674 + -1.5 895,674 + -0.9 895,674 + -0.5 895,674 + +0.4 895,674 + -1.5 895,674 + -0.1 895,674 + +0.5 895,674 + -0.7 895,674 + -0.6 895,675 - -0.1 895,675 - -1.3 895,675 - +0.6 895,675 - +0.2 895,675 - -0.6 895,675 - -0.2 895,675 - +1.6 895,675 - +0.9 895,675 - -0.8 895,675 - +0.6 895,675 - -0.4 895,675 - -0.4 895,675 - +0.5 895,680 + -0.4 895,681 + -0.1 895,681 - -0.6 895,682 + +0.8 895,682 + +0.2 895,682 + +0.7 895,683 - +2.1 895,683 - +0.0 895,683 - +0.5 895,683 - -0.2 895,683 - +0.5 895,683 - -0.7 895,683 - -1.1 895,683 - -0.1 895,683 - -0.7 895,683 - -0.4 895,683 - +0.3 895,686 + +0.9 895,686 + +0.3 895,686 + -0.6 895,686 + +1.0 895,686 + +0.5 895,687 - +0.1 895,687 - +0.4 895,687 - -0.1 895,687 - +0.0 895,687 - -1.5 895,698 + -0.2 895,698 + -0.5 895,699 - -0.0
Or see this region's nucleotide sequence