Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03915

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03910 and ABZR87_RS03915 are separated by 758 nucleotidesABZR87_RS03915 and ABZR87_RS03920 are separated by 273 nucleotides ABZR87_RS03910: ABZR87_RS03910 - oxygen-independent coproporphyrinogen III oxidase, at 809,046 to 810,530 _RS03910 ABZR87_RS03915: ABZR87_RS03915 - UvrD-helicase domain-containing protein, at 811,289 to 813,421 _RS03915 ABZR87_RS03920: ABZR87_RS03920 - hypothetical protein, at 813,695 to 814,021 _RS03920 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -3 -2 -1 0 1at 810.295 kb on + strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.295 kb on + strand, within ABZR87_RS03910at 810.296 kb on - strand, within ABZR87_RS03910at 810.296 kb on - strand, within ABZR87_RS03910at 810.296 kb on - strand, within ABZR87_RS03910at 810.358 kb on + strand, within ABZR87_RS03910at 810.410 kb on + strandat 810.410 kb on + strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.411 kb on - strandat 810.412 kb on + strandat 810.412 kb on + strandat 810.429 kb on - strandat 810.429 kb on - strandat 810.541 kb on + strandat 810.541 kb on + strandat 810.542 kb on - strandat 810.542 kb on - strandat 810.553 kb on + strandat 810.554 kb on - strandat 810.554 kb on - strandat 810.554 kb on - strandat 810.563 kb on + strandat 810.563 kb on + strandat 810.954 kb on + strandat 810.954 kb on + strandat 810.954 kb on + strandat 811.417 kb on + strandat 811.417 kb on + strandat 811.418 kb on - strandat 811.418 kb on - strandat 811.418 kb on - strandat 811.418 kb on - strandat 811.419 kb on + strandat 811.419 kb on + strandat 811.420 kb on - strandat 811.420 kb on - strandat 811.420 kb on - strandat 811.480 kb on + strandat 811.480 kb on + strandat 811.481 kb on - strandat 811.481 kb on - strandat 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.515 kb on + strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.516 kb on - strand, within ABZR87_RS03915at 811.620 kb on + strand, within ABZR87_RS03915at 811.620 kb on + strand, within ABZR87_RS03915at 811.620 kb on + strand, within ABZR87_RS03915at 811.736 kb on - strand, within ABZR87_RS03915at 811.736 kb on - strand, within ABZR87_RS03915at 811.890 kb on + strand, within ABZR87_RS03915at 811.890 kb on + strand, within ABZR87_RS03915at 811.890 kb on + strand, within ABZR87_RS03915at 811.890 kb on + strand, within ABZR87_RS03915at 811.899 kb on + strand, within ABZR87_RS03915at 811.899 kb on + strand, within ABZR87_RS03915at 811.899 kb on + strand, within ABZR87_RS03915at 811.900 kb on - strand, within ABZR87_RS03915at 811.900 kb on - strand, within ABZR87_RS03915at 811.905 kb on + strand, within ABZR87_RS03915at 811.905 kb on + strand, within ABZR87_RS03915at 811.905 kb on + strand, within ABZR87_RS03915at 811.905 kb on + strand, within ABZR87_RS03915at 811.905 kb on + strand, within ABZR87_RS03915at 811.906 kb on - strand, within ABZR87_RS03915at 811.906 kb on - strand, within ABZR87_RS03915at 811.914 kb on + strand, within ABZR87_RS03915at 811.915 kb on - strand, within ABZR87_RS03915at 811.915 kb on - strand, within ABZR87_RS03915at 812.202 kb on + strand, within ABZR87_RS03915at 812.203 kb on - strand, within ABZR87_RS03915at 812.262 kb on + strand, within ABZR87_RS03915at 812.262 kb on + strand, within ABZR87_RS03915at 812.262 kb on + strand, within ABZR87_RS03915at 812.263 kb on - strand, within ABZR87_RS03915at 812.263 kb on - strand, within ABZR87_RS03915at 812.263 kb on - strand, within ABZR87_RS03915at 812.322 kb on + strand, within ABZR87_RS03915at 812.539 kb on - strand, within ABZR87_RS03915at 812.539 kb on - strand, within ABZR87_RS03915at 812.625 kb on + strand, within ABZR87_RS03915at 812.625 kb on + strand, within ABZR87_RS03915at 812.625 kb on + strand, within ABZR87_RS03915at 812.626 kb on - strand, within ABZR87_RS03915at 812.626 kb on - strand, within ABZR87_RS03915at 812.626 kb on - strand, within ABZR87_RS03915at 812.709 kb on + strand, within ABZR87_RS03915at 812.710 kb on - strand, within ABZR87_RS03915at 812.710 kb on - strand, within ABZR87_RS03915at 812.733 kb on + strand, within ABZR87_RS03915at 812.733 kb on + strand, within ABZR87_RS03915at 812.733 kb on + strand, within ABZR87_RS03915at 812.734 kb on - strand, within ABZR87_RS03915at 812.734 kb on - strand, within ABZR87_RS03915at 812.734 kb on - strand, within ABZR87_RS03915at 812.751 kb on + strand, within ABZR87_RS03915at 812.868 kb on + strand, within ABZR87_RS03915at 812.868 kb on + strand, within ABZR87_RS03915at 812.868 kb on + strand, within ABZR87_RS03915at 812.869 kb on - strand, within ABZR87_RS03915at 812.869 kb on - strand, within ABZR87_RS03915at 812.869 kb on - strand, within ABZR87_RS03915at 812.869 kb on - strand, within ABZR87_RS03915at 812.869 kb on - strand, within ABZR87_RS03915at 812.869 kb on - strand, within ABZR87_RS03915at 812.911 kb on - strand, within ABZR87_RS03915at 813.133 kb on + strand, within ABZR87_RS03915at 813.133 kb on + strand, within ABZR87_RS03915at 813.134 kb on - strand, within ABZR87_RS03915at 813.134 kb on - strand, within ABZR87_RS03915at 813.134 kb on - strand, within ABZR87_RS03915at 813.366 kb on + strandat 813.367 kb on - strandat 813.367 kb on - strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.472 kb on + strandat 813.473 kb on - strandat 813.473 kb on - strandat 813.473 kb on - strandat 813.588 kb on - strandat 813.588 kb on - strandat 813.588 kb on - strandat 813.588 kb on - strandat 813.596 kb on + strandat 813.597 kb on - strandat 813.619 kb on + strandat 813.619 kb on + strandat 813.619 kb on + strandat 813.619 kb on + strandat 813.620 kb on - strandat 813.620 kb on - strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.019 kb on + strandat 814.020 kb on - strandat 814.020 kb on - strandat 814.128 kb on - strandat 814.128 kb on - strandat 814.128 kb on - strandat 814.128 kb on - strandat 814.293 kb on + strandat 814.293 kb on + strandat 814.413 kb on - strandat 814.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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810,295 + ABZR87_RS03910 0.84 -0.0
810,295 + ABZR87_RS03910 0.84 -0.4
810,295 + ABZR87_RS03910 0.84 +0.3
810,295 + ABZR87_RS03910 0.84 -0.6
810,296 - ABZR87_RS03910 0.84 -0.2
810,296 - ABZR87_RS03910 0.84 +0.3
810,296 - ABZR87_RS03910 0.84 +0.7
810,358 + ABZR87_RS03910 0.88 -2.2
810,410 + -0.7
810,410 + +0.9
810,411 - -0.3
810,411 - +0.3
810,411 - -1.6
810,411 - +0.1
810,411 - -0.9
810,411 - -0.1
810,411 - -0.4
810,412 + -0.9
810,412 + -0.3
810,429 - -1.6
810,429 - -0.1
810,541 + -1.1
810,541 + +0.1
810,542 - +0.2
810,542 - -0.1
810,553 + -0.6
810,554 - +1.3
810,554 - +0.6
810,554 - -0.3
810,563 + +0.5
810,563 + -0.8
810,954 + +0.8
810,954 + -0.6
810,954 + -0.1
811,417 + -1.5
811,417 + -1.8
811,418 - -1.3
811,418 - -2.0
811,418 - -0.4
811,418 - +0.1
811,419 + -2.2
811,419 + -1.1
811,420 - -0.6
811,420 - +0.2
811,420 - -1.4
811,480 + +1.0
811,480 + -0.2
811,481 - -0.6
811,481 - -1.0
811,515 + ABZR87_RS03915 0.11 -0.9
811,515 + ABZR87_RS03915 0.11 -0.8
811,515 + ABZR87_RS03915 0.11 -1.5
811,515 + ABZR87_RS03915 0.11 +1.4
811,515 + ABZR87_RS03915 0.11 -0.2
811,515 + ABZR87_RS03915 0.11 -2.0
811,515 + ABZR87_RS03915 0.11 -0.3
811,515 + ABZR87_RS03915 0.11 -0.9
811,515 + ABZR87_RS03915 0.11 -1.6
811,515 + ABZR87_RS03915 0.11 +1.0
811,515 + ABZR87_RS03915 0.11 -0.1
811,516 - ABZR87_RS03915 0.11 -1.4
811,516 - ABZR87_RS03915 0.11 +0.3
811,516 - ABZR87_RS03915 0.11 -1.6
811,516 - ABZR87_RS03915 0.11 -1.9
811,516 - ABZR87_RS03915 0.11 +0.6
811,516 - ABZR87_RS03915 0.11 -1.1
811,516 - ABZR87_RS03915 0.11 -1.1
811,516 - ABZR87_RS03915 0.11 +1.0
811,516 - ABZR87_RS03915 0.11 -0.3
811,516 - ABZR87_RS03915 0.11 +0.2
811,516 - ABZR87_RS03915 0.11 -1.7
811,516 - ABZR87_RS03915 0.11 -0.9
811,516 - ABZR87_RS03915 0.11 +1.1
811,516 - ABZR87_RS03915 0.11 -0.6
811,620 + ABZR87_RS03915 0.16 -1.4
811,620 + ABZR87_RS03915 0.16 -2.4
811,620 + ABZR87_RS03915 0.16 -1.4
811,736 - ABZR87_RS03915 0.21 +0.0
811,736 - ABZR87_RS03915 0.21 -0.6
811,890 + ABZR87_RS03915 0.28 +0.8
811,890 + ABZR87_RS03915 0.28 -0.9
811,890 + ABZR87_RS03915 0.28 -0.3
811,890 + ABZR87_RS03915 0.28 -1.4
811,899 + ABZR87_RS03915 0.29 -0.8
811,899 + ABZR87_RS03915 0.29 -0.7
811,899 + ABZR87_RS03915 0.29 -0.4
811,900 - ABZR87_RS03915 0.29 +0.2
811,900 - ABZR87_RS03915 0.29 +1.2
811,905 + ABZR87_RS03915 0.29 -2.0
811,905 + ABZR87_RS03915 0.29 -2.0
811,905 + ABZR87_RS03915 0.29 -0.4
811,905 + ABZR87_RS03915 0.29 -2.1
811,905 + ABZR87_RS03915 0.29 -0.9
811,906 - ABZR87_RS03915 0.29 +0.1
811,906 - ABZR87_RS03915 0.29 -1.7
811,914 + ABZR87_RS03915 0.29 -0.1
811,915 - ABZR87_RS03915 0.29 -1.2
811,915 - ABZR87_RS03915 0.29 -1.1
812,202 + ABZR87_RS03915 0.43 -1.8
812,203 - ABZR87_RS03915 0.43 -0.2
812,262 + ABZR87_RS03915 0.46 -1.5
812,262 + ABZR87_RS03915 0.46 -2.5
812,262 + ABZR87_RS03915 0.46 +0.0
812,263 - ABZR87_RS03915 0.46 -2.4
812,263 - ABZR87_RS03915 0.46 -0.3
812,263 - ABZR87_RS03915 0.46 -0.7
812,322 + ABZR87_RS03915 0.48 -1.4
812,539 - ABZR87_RS03915 0.59 -1.9
812,539 - ABZR87_RS03915 0.59 +0.5
812,625 + ABZR87_RS03915 0.63 -0.8
812,625 + ABZR87_RS03915 0.63 -1.4
812,625 + ABZR87_RS03915 0.63 -1.1
812,626 - ABZR87_RS03915 0.63 -0.2
812,626 - ABZR87_RS03915 0.63 +1.1
812,626 - ABZR87_RS03915 0.63 -1.1
812,709 + ABZR87_RS03915 0.67 +0.4
812,710 - ABZR87_RS03915 0.67 -0.5
812,710 - ABZR87_RS03915 0.67 -2.9
812,733 + ABZR87_RS03915 0.68 -1.5
812,733 + ABZR87_RS03915 0.68 +0.2
812,733 + ABZR87_RS03915 0.68 -0.8
812,734 - ABZR87_RS03915 0.68 +1.1
812,734 - ABZR87_RS03915 0.68 -0.2
812,734 - ABZR87_RS03915 0.68 -0.6
812,751 + ABZR87_RS03915 0.69 -0.0
812,868 + ABZR87_RS03915 0.74 -0.5
812,868 + ABZR87_RS03915 0.74 -1.2
812,868 + ABZR87_RS03915 0.74 -1.2
812,869 - ABZR87_RS03915 0.74 -2.3
812,869 - ABZR87_RS03915 0.74 -1.4
812,869 - ABZR87_RS03915 0.74 -0.5
812,869 - ABZR87_RS03915 0.74 -0.3
812,869 - ABZR87_RS03915 0.74 -0.8
812,869 - ABZR87_RS03915 0.74 -3.6
812,911 - ABZR87_RS03915 0.76 -0.3
813,133 + ABZR87_RS03915 0.86 -0.6
813,133 + ABZR87_RS03915 0.86 -0.9
813,134 - ABZR87_RS03915 0.86 -2.2
813,134 - ABZR87_RS03915 0.86 -0.5
813,134 - ABZR87_RS03915 0.86 -1.1
813,366 + -1.8
813,367 - -0.9
813,367 - -1.0
813,472 + -0.7
813,472 + -0.8
813,472 + -1.0
813,472 + +0.1
813,472 + +0.5
813,472 + -0.3
813,472 + +0.3
813,472 + +0.1
813,472 + -0.2
813,473 - +0.2
813,473 - +0.1
813,473 - +0.4
813,588 - +0.4
813,588 - +0.6
813,588 - +0.4
813,588 - +0.4
813,596 + +0.2
813,597 - +0.1
813,619 + +0.6
813,619 + +0.2
813,619 + -0.1
813,619 + -0.4
813,620 - +0.0
813,620 - +0.1
814,019 + -0.0
814,019 + -0.7
814,019 + +0.4
814,019 + +1.0
814,019 + +0.1
814,019 + +0.2
814,019 + +0.4
814,019 + -1.0
814,019 + -0.6
814,020 - +0.2
814,020 - -0.1
814,128 - -0.1
814,128 - -0.8
814,128 - -1.5
814,128 - -0.2
814,293 + -0.7
814,293 + -0.7
814,413 - -0.7
814,413 - -1.2

Or see this region's nucleotide sequence