Experiment: Ra1_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03910 and ABZR87_RS03915 are separated by 758 nucleotides ABZR87_RS03915 and ABZR87_RS03920 are separated by 273 nucleotides
ABZR87_RS03910: ABZR87_RS03910 - oxygen-independent coproporphyrinogen III oxidase, at 809,046 to 810,530
_RS03910
ABZR87_RS03915: ABZR87_RS03915 - UvrD-helicase domain-containing protein, at 811,289 to 813,421
_RS03915
ABZR87_RS03920: ABZR87_RS03920 - hypothetical protein, at 813,695 to 814,021
_RS03920
Position (kb)
811
812
813
814 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.295 kb on + strand, within ABZR87_RS03910 at 810.296 kb on - strand, within ABZR87_RS03910 at 810.296 kb on - strand, within ABZR87_RS03910 at 810.296 kb on - strand, within ABZR87_RS03910 at 810.358 kb on + strand, within ABZR87_RS03910 at 810.410 kb on + strand at 810.410 kb on + strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.411 kb on - strand at 810.412 kb on + strand at 810.412 kb on + strand at 810.429 kb on - strand at 810.429 kb on - strand at 810.541 kb on + strand at 810.541 kb on + strand at 810.542 kb on - strand at 810.542 kb on - strand at 810.553 kb on + strand at 810.554 kb on - strand at 810.554 kb on - strand at 810.554 kb on - strand at 810.563 kb on + strand at 810.563 kb on + strand at 810.954 kb on + strand at 810.954 kb on + strand at 810.954 kb on + strand at 811.417 kb on + strand at 811.417 kb on + strand at 811.418 kb on - strand at 811.418 kb on - strand at 811.418 kb on - strand at 811.418 kb on - strand at 811.419 kb on + strand at 811.419 kb on + strand at 811.420 kb on - strand at 811.420 kb on - strand at 811.420 kb on - strand at 811.480 kb on + strand at 811.480 kb on + strand at 811.481 kb on - strand at 811.481 kb on - strand at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.515 kb on + strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.516 kb on - strand, within ABZR87_RS03915 at 811.620 kb on + strand, within ABZR87_RS03915 at 811.620 kb on + strand, within ABZR87_RS03915 at 811.620 kb on + strand, within ABZR87_RS03915 at 811.736 kb on - strand, within ABZR87_RS03915 at 811.736 kb on - strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.890 kb on + strand, within ABZR87_RS03915 at 811.899 kb on + strand, within ABZR87_RS03915 at 811.899 kb on + strand, within ABZR87_RS03915 at 811.899 kb on + strand, within ABZR87_RS03915 at 811.900 kb on - strand, within ABZR87_RS03915 at 811.900 kb on - strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.905 kb on + strand, within ABZR87_RS03915 at 811.906 kb on - strand, within ABZR87_RS03915 at 811.906 kb on - strand, within ABZR87_RS03915 at 811.914 kb on + strand, within ABZR87_RS03915 at 811.915 kb on - strand, within ABZR87_RS03915 at 811.915 kb on - strand, within ABZR87_RS03915 at 812.202 kb on + strand, within ABZR87_RS03915 at 812.203 kb on - strand, within ABZR87_RS03915 at 812.262 kb on + strand, within ABZR87_RS03915 at 812.262 kb on + strand, within ABZR87_RS03915 at 812.262 kb on + strand, within ABZR87_RS03915 at 812.263 kb on - strand, within ABZR87_RS03915 at 812.263 kb on - strand, within ABZR87_RS03915 at 812.263 kb on - strand, within ABZR87_RS03915 at 812.322 kb on + strand, within ABZR87_RS03915 at 812.539 kb on - strand, within ABZR87_RS03915 at 812.539 kb on - strand, within ABZR87_RS03915 at 812.625 kb on + strand, within ABZR87_RS03915 at 812.625 kb on + strand, within ABZR87_RS03915 at 812.625 kb on + strand, within ABZR87_RS03915 at 812.626 kb on - strand, within ABZR87_RS03915 at 812.626 kb on - strand, within ABZR87_RS03915 at 812.626 kb on - strand, within ABZR87_RS03915 at 812.709 kb on + strand, within ABZR87_RS03915 at 812.710 kb on - strand, within ABZR87_RS03915 at 812.710 kb on - strand, within ABZR87_RS03915 at 812.733 kb on + strand, within ABZR87_RS03915 at 812.733 kb on + strand, within ABZR87_RS03915 at 812.733 kb on + strand, within ABZR87_RS03915 at 812.734 kb on - strand, within ABZR87_RS03915 at 812.734 kb on - strand, within ABZR87_RS03915 at 812.734 kb on - strand, within ABZR87_RS03915 at 812.751 kb on + strand, within ABZR87_RS03915 at 812.868 kb on + strand, within ABZR87_RS03915 at 812.868 kb on + strand, within ABZR87_RS03915 at 812.868 kb on + strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.869 kb on - strand, within ABZR87_RS03915 at 812.911 kb on - strand, within ABZR87_RS03915 at 813.133 kb on + strand, within ABZR87_RS03915 at 813.133 kb on + strand, within ABZR87_RS03915 at 813.134 kb on - strand, within ABZR87_RS03915 at 813.134 kb on - strand, within ABZR87_RS03915 at 813.134 kb on - strand, within ABZR87_RS03915 at 813.366 kb on + strand at 813.367 kb on - strand at 813.367 kb on - strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.472 kb on + strand at 813.473 kb on - strand at 813.473 kb on - strand at 813.473 kb on - strand at 813.588 kb on - strand at 813.588 kb on - strand at 813.588 kb on - strand at 813.588 kb on - strand at 813.596 kb on + strand at 813.597 kb on - strand at 813.619 kb on + strand at 813.619 kb on + strand at 813.619 kb on + strand at 813.619 kb on + strand at 813.620 kb on - strand at 813.620 kb on - strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.019 kb on + strand at 814.020 kb on - strand at 814.020 kb on - strand at 814.128 kb on - strand at 814.128 kb on - strand at 814.128 kb on - strand at 814.128 kb on - strand at 814.293 kb on + strand at 814.293 kb on + strand at 814.413 kb on - strand at 814.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.01 remove 810,295 + ABZR87_RS03910 0.84 -0.0 810,295 + ABZR87_RS03910 0.84 -0.4 810,295 + ABZR87_RS03910 0.84 +0.3 810,295 + ABZR87_RS03910 0.84 -0.6 810,296 - ABZR87_RS03910 0.84 -0.2 810,296 - ABZR87_RS03910 0.84 +0.3 810,296 - ABZR87_RS03910 0.84 +0.7 810,358 + ABZR87_RS03910 0.88 -2.2 810,410 + -0.7 810,410 + +0.9 810,411 - -0.3 810,411 - +0.3 810,411 - -1.6 810,411 - +0.1 810,411 - -0.9 810,411 - -0.1 810,411 - -0.4 810,412 + -0.9 810,412 + -0.3 810,429 - -1.6 810,429 - -0.1 810,541 + -1.1 810,541 + +0.1 810,542 - +0.2 810,542 - -0.1 810,553 + -0.6 810,554 - +1.3 810,554 - +0.6 810,554 - -0.3 810,563 + +0.5 810,563 + -0.8 810,954 + +0.8 810,954 + -0.6 810,954 + -0.1 811,417 + -1.5 811,417 + -1.8 811,418 - -1.3 811,418 - -2.0 811,418 - -0.4 811,418 - +0.1 811,419 + -2.2 811,419 + -1.1 811,420 - -0.6 811,420 - +0.2 811,420 - -1.4 811,480 + +1.0 811,480 + -0.2 811,481 - -0.6 811,481 - -1.0 811,515 + ABZR87_RS03915 0.11 -0.9 811,515 + ABZR87_RS03915 0.11 -0.8 811,515 + ABZR87_RS03915 0.11 -1.5 811,515 + ABZR87_RS03915 0.11 +1.4 811,515 + ABZR87_RS03915 0.11 -0.2 811,515 + ABZR87_RS03915 0.11 -2.0 811,515 + ABZR87_RS03915 0.11 -0.3 811,515 + ABZR87_RS03915 0.11 -0.9 811,515 + ABZR87_RS03915 0.11 -1.6 811,515 + ABZR87_RS03915 0.11 +1.0 811,515 + ABZR87_RS03915 0.11 -0.1 811,516 - ABZR87_RS03915 0.11 -1.4 811,516 - ABZR87_RS03915 0.11 +0.3 811,516 - ABZR87_RS03915 0.11 -1.6 811,516 - ABZR87_RS03915 0.11 -1.9 811,516 - ABZR87_RS03915 0.11 +0.6 811,516 - ABZR87_RS03915 0.11 -1.1 811,516 - ABZR87_RS03915 0.11 -1.1 811,516 - ABZR87_RS03915 0.11 +1.0 811,516 - ABZR87_RS03915 0.11 -0.3 811,516 - ABZR87_RS03915 0.11 +0.2 811,516 - ABZR87_RS03915 0.11 -1.7 811,516 - ABZR87_RS03915 0.11 -0.9 811,516 - ABZR87_RS03915 0.11 +1.1 811,516 - ABZR87_RS03915 0.11 -0.6 811,620 + ABZR87_RS03915 0.16 -1.4 811,620 + ABZR87_RS03915 0.16 -2.4 811,620 + ABZR87_RS03915 0.16 -1.4 811,736 - ABZR87_RS03915 0.21 +0.0 811,736 - ABZR87_RS03915 0.21 -0.6 811,890 + ABZR87_RS03915 0.28 +0.8 811,890 + ABZR87_RS03915 0.28 -0.9 811,890 + ABZR87_RS03915 0.28 -0.3 811,890 + ABZR87_RS03915 0.28 -1.4 811,899 + ABZR87_RS03915 0.29 -0.8 811,899 + ABZR87_RS03915 0.29 -0.7 811,899 + ABZR87_RS03915 0.29 -0.4 811,900 - ABZR87_RS03915 0.29 +0.2 811,900 - ABZR87_RS03915 0.29 +1.2 811,905 + ABZR87_RS03915 0.29 -2.0 811,905 + ABZR87_RS03915 0.29 -2.0 811,905 + ABZR87_RS03915 0.29 -0.4 811,905 + ABZR87_RS03915 0.29 -2.1 811,905 + ABZR87_RS03915 0.29 -0.9 811,906 - ABZR87_RS03915 0.29 +0.1 811,906 - ABZR87_RS03915 0.29 -1.7 811,914 + ABZR87_RS03915 0.29 -0.1 811,915 - ABZR87_RS03915 0.29 -1.2 811,915 - ABZR87_RS03915 0.29 -1.1 812,202 + ABZR87_RS03915 0.43 -1.8 812,203 - ABZR87_RS03915 0.43 -0.2 812,262 + ABZR87_RS03915 0.46 -1.5 812,262 + ABZR87_RS03915 0.46 -2.5 812,262 + ABZR87_RS03915 0.46 +0.0 812,263 - ABZR87_RS03915 0.46 -2.4 812,263 - ABZR87_RS03915 0.46 -0.3 812,263 - ABZR87_RS03915 0.46 -0.7 812,322 + ABZR87_RS03915 0.48 -1.4 812,539 - ABZR87_RS03915 0.59 -1.9 812,539 - ABZR87_RS03915 0.59 +0.5 812,625 + ABZR87_RS03915 0.63 -0.8 812,625 + ABZR87_RS03915 0.63 -1.4 812,625 + ABZR87_RS03915 0.63 -1.1 812,626 - ABZR87_RS03915 0.63 -0.2 812,626 - ABZR87_RS03915 0.63 +1.1 812,626 - ABZR87_RS03915 0.63 -1.1 812,709 + ABZR87_RS03915 0.67 +0.4 812,710 - ABZR87_RS03915 0.67 -0.5 812,710 - ABZR87_RS03915 0.67 -2.9 812,733 + ABZR87_RS03915 0.68 -1.5 812,733 + ABZR87_RS03915 0.68 +0.2 812,733 + ABZR87_RS03915 0.68 -0.8 812,734 - ABZR87_RS03915 0.68 +1.1 812,734 - ABZR87_RS03915 0.68 -0.2 812,734 - ABZR87_RS03915 0.68 -0.6 812,751 + ABZR87_RS03915 0.69 -0.0 812,868 + ABZR87_RS03915 0.74 -0.5 812,868 + ABZR87_RS03915 0.74 -1.2 812,868 + ABZR87_RS03915 0.74 -1.2 812,869 - ABZR87_RS03915 0.74 -2.3 812,869 - ABZR87_RS03915 0.74 -1.4 812,869 - ABZR87_RS03915 0.74 -0.5 812,869 - ABZR87_RS03915 0.74 -0.3 812,869 - ABZR87_RS03915 0.74 -0.8 812,869 - ABZR87_RS03915 0.74 -3.6 812,911 - ABZR87_RS03915 0.76 -0.3 813,133 + ABZR87_RS03915 0.86 -0.6 813,133 + ABZR87_RS03915 0.86 -0.9 813,134 - ABZR87_RS03915 0.86 -2.2 813,134 - ABZR87_RS03915 0.86 -0.5 813,134 - ABZR87_RS03915 0.86 -1.1 813,366 + -1.8 813,367 - -0.9 813,367 - -1.0 813,472 + -0.7 813,472 + -0.8 813,472 + -1.0 813,472 + +0.1 813,472 + +0.5 813,472 + -0.3 813,472 + +0.3 813,472 + +0.1 813,472 + -0.2 813,473 - +0.2 813,473 - +0.1 813,473 - +0.4 813,588 - +0.4 813,588 - +0.6 813,588 - +0.4 813,588 - +0.4 813,596 + +0.2 813,597 - +0.1 813,619 + +0.6 813,619 + +0.2 813,619 + -0.1 813,619 + -0.4 813,620 - +0.0 813,620 - +0.1 814,019 + -0.0 814,019 + -0.7 814,019 + +0.4 814,019 + +1.0 814,019 + +0.1 814,019 + +0.2 814,019 + +0.4 814,019 + -1.0 814,019 + -0.6 814,020 - +0.2 814,020 - -0.1 814,128 - -0.1 814,128 - -0.8 814,128 - -1.5 814,128 - -0.2 814,293 + -0.7 814,293 + -0.7 814,413 - -0.7 814,413 - -1.2
Or see this region's nucleotide sequence