Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02640

Experiment: Ra1_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02625 and ABZR87_RS02630 are separated by 72 nucleotidesABZR87_RS02630 and ABZR87_RS02635 are separated by 138 nucleotidesABZR87_RS02635 and ABZR87_RS02640 are separated by 64 nucleotidesABZR87_RS02640 and ABZR87_RS02645 are separated by 64 nucleotidesABZR87_RS02645 and ABZR87_RS02650 are separated by 7 nucleotides ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551 _RS02625 ABZR87_RS02630: ABZR87_RS02630 - iron donor protein CyaY, at 560,624 to 560,968 _RS02630 ABZR87_RS02635: ABZR87_RS02635 - lipoprotein, at 561,107 to 561,340 _RS02635 ABZR87_RS02640: ABZR87_RS02640 - diaminopimelate decarboxylase, at 561,405 to 562,664 _RS02640 ABZR87_RS02645: ABZR87_RS02645 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 562,729 to 563,385 _RS02645 ABZR87_RS02650: ABZR87_RS02650 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 563,393 to 564,388 _RS02650 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 560.670 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.688 kb on + strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.689 kb on - strand, within ABZR87_RS02630at 560.845 kb on + strand, within ABZR87_RS02630at 560.845 kb on + strand, within ABZR87_RS02630at 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.971 kb on + strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 560.972 kb on - strandat 561.047 kb on + strandat 561.373 kb on + strandat 561.374 kb on - strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.495 kb on + strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.496 kb on - strandat 561.501 kb on + strandat 561.501 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.528 kb on + strandat 561.529 kb on - strandat 561.537 kb on + strand, within ABZR87_RS02640at 561.576 kb on + strand, within ABZR87_RS02640at 561.576 kb on + strand, within ABZR87_RS02640at 561.576 kb on + strand, within ABZR87_RS02640at 561.577 kb on - strand, within ABZR87_RS02640at 561.577 kb on - strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.952 kb on - strand, within ABZR87_RS02640at 562.130 kb on + strand, within ABZR87_RS02640at 562.131 kb on - strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.363 kb on - strand, within ABZR87_RS02640at 562.363 kb on - strand, within ABZR87_RS02640at 562.371 kb on + strand, within ABZR87_RS02640at 562.371 kb on + strand, within ABZR87_RS02640at 562.371 kb on + strand, within ABZR87_RS02640at 562.372 kb on - strand, within ABZR87_RS02640at 562.372 kb on - strand, within ABZR87_RS02640at 562.419 kb on + strand, within ABZR87_RS02640at 562.420 kb on - strand, within ABZR87_RS02640at 562.548 kb on + strandat 562.548 kb on + strandat 562.548 kb on + strandat 562.549 kb on - strandat 562.549 kb on - strandat 562.662 kb on + strandat 562.663 kb on - strandat 562.663 kb on - strandat 562.829 kb on + strand, within ABZR87_RS02645at 562.876 kb on + strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.907 kb on + strand, within ABZR87_RS02645at 562.907 kb on + strand, within ABZR87_RS02645at 562.908 kb on - strand, within ABZR87_RS02645at 563.123 kb on + strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.405 kb on - strandat 563.424 kb on + strandat 563.424 kb on + strandat 563.425 kb on - strandat 563.425 kb on - strandat 563.446 kb on - strandat 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.575 kb on - strand, within ABZR87_RS02650at 563.583 kb on + strand, within ABZR87_RS02650at 563.584 kb on - strand, within ABZR87_RS02650

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.01
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560,670 + ABZR87_RS02630 0.13 -1.0
560,688 + ABZR87_RS02630 0.19 +0.3
560,688 + ABZR87_RS02630 0.19 -2.4
560,688 + ABZR87_RS02630 0.19 +0.3
560,688 + ABZR87_RS02630 0.19 +0.5
560,688 + ABZR87_RS02630 0.19 -1.1
560,688 + ABZR87_RS02630 0.19 -1.6
560,688 + ABZR87_RS02630 0.19 +0.3
560,688 + ABZR87_RS02630 0.19 -1.2
560,688 + ABZR87_RS02630 0.19 -1.2
560,688 + ABZR87_RS02630 0.19 -1.3
560,688 + ABZR87_RS02630 0.19 +1.3
560,689 - ABZR87_RS02630 0.19 -0.5
560,689 - ABZR87_RS02630 0.19 +0.4
560,689 - ABZR87_RS02630 0.19 +0.9
560,689 - ABZR87_RS02630 0.19 +0.7
560,689 - ABZR87_RS02630 0.19 +0.8
560,689 - ABZR87_RS02630 0.19 -0.2
560,689 - ABZR87_RS02630 0.19 -0.1
560,689 - ABZR87_RS02630 0.19 -0.3
560,689 - ABZR87_RS02630 0.19 -0.7
560,689 - ABZR87_RS02630 0.19 -0.2
560,689 - ABZR87_RS02630 0.19 -0.1
560,689 - ABZR87_RS02630 0.19 -0.8
560,845 + ABZR87_RS02630 0.64 -0.5
560,845 + ABZR87_RS02630 0.64 +0.8
560,971 + -1.0
560,971 + -1.1
560,971 + +1.8
560,971 + +0.8
560,971 + -0.6
560,972 - +2.2
560,972 - -1.1
560,972 - -0.6
560,972 - -0.5
560,972 - +0.6
560,972 - -1.7
560,972 - +0.3
560,972 - +0.5
560,972 - +0.3
560,972 - -1.0
561,047 + +0.3
561,373 + -0.1
561,374 - -0.7
561,495 + -1.2
561,495 + -1.8
561,495 + -1.7
561,495 + -1.4
561,495 + -1.7
561,495 + -0.6
561,495 + -1.7
561,495 + -0.7
561,495 + -1.2
561,495 + -1.6
561,496 - +0.6
561,496 - -1.7
561,496 - -0.7
561,496 - -1.5
561,496 - -1.4
561,496 - -1.2
561,496 - +1.1
561,501 + -0.5
561,501 + +0.3
561,528 + -1.6
561,528 + -1.2
561,528 + -2.0
561,528 + -2.5
561,528 + -1.4
561,529 - -2.0
561,537 + ABZR87_RS02640 0.10 -0.5
561,576 + ABZR87_RS02640 0.14 -0.8
561,576 + ABZR87_RS02640 0.14 -2.0
561,576 + ABZR87_RS02640 0.14 -1.1
561,577 - ABZR87_RS02640 0.14 -1.2
561,577 - ABZR87_RS02640 0.14 -3.3
561,888 + ABZR87_RS02640 0.38 -1.6
561,888 + ABZR87_RS02640 0.38 +0.3
561,888 + ABZR87_RS02640 0.38 -2.0
561,888 + ABZR87_RS02640 0.38 +0.6
561,888 + ABZR87_RS02640 0.38 -1.4
561,888 + ABZR87_RS02640 0.38 -1.0
561,888 + ABZR87_RS02640 0.38 -0.2
561,888 + ABZR87_RS02640 0.38 -1.7
561,888 + ABZR87_RS02640 0.38 -0.6
561,888 + ABZR87_RS02640 0.38 -1.5
561,889 - ABZR87_RS02640 0.38 -1.9
561,889 - ABZR87_RS02640 0.38 -0.7
561,889 - ABZR87_RS02640 0.38 -1.5
561,889 - ABZR87_RS02640 0.38 -2.2
561,889 - ABZR87_RS02640 0.38 -1.4
561,889 - ABZR87_RS02640 0.38 -1.2
561,889 - ABZR87_RS02640 0.38 -1.3
561,952 - ABZR87_RS02640 0.43 -1.9
562,130 + ABZR87_RS02640 0.58 +1.8
562,131 - ABZR87_RS02640 0.58 -0.5
562,137 + ABZR87_RS02640 0.58 -2.5
562,137 + ABZR87_RS02640 0.58 -2.4
562,137 + ABZR87_RS02640 0.58 -1.5
562,137 + ABZR87_RS02640 0.58 -0.5
562,137 + ABZR87_RS02640 0.58 -1.1
562,137 + ABZR87_RS02640 0.58 -1.6
562,137 + ABZR87_RS02640 0.58 +1.6
562,137 + ABZR87_RS02640 0.58 -1.0
562,138 - ABZR87_RS02640 0.58 -0.8
562,138 - ABZR87_RS02640 0.58 -1.3
562,138 - ABZR87_RS02640 0.58 -2.6
562,138 - ABZR87_RS02640 0.58 -0.4
562,362 + ABZR87_RS02640 0.76 -2.0
562,362 + ABZR87_RS02640 0.76 -0.7
562,362 + ABZR87_RS02640 0.76 -1.6
562,362 + ABZR87_RS02640 0.76 -1.2
562,363 - ABZR87_RS02640 0.76 -0.9
562,363 - ABZR87_RS02640 0.76 +0.3
562,371 + ABZR87_RS02640 0.77 +0.0
562,371 + ABZR87_RS02640 0.77 -1.0
562,371 + ABZR87_RS02640 0.77 -0.3
562,372 - ABZR87_RS02640 0.77 -3.4
562,372 - ABZR87_RS02640 0.77 -0.7
562,419 + ABZR87_RS02640 0.80 -0.7
562,420 - ABZR87_RS02640 0.81 -0.0
562,548 + -0.1
562,548 + -1.2
562,548 + -1.0
562,549 - -1.3
562,549 - -1.9
562,662 + -0.4
562,663 - -0.7
562,663 - -0.7
562,829 + ABZR87_RS02645 0.15 +0.2
562,876 + ABZR87_RS02645 0.22 +0.1
562,878 - ABZR87_RS02645 0.23 +0.3
562,878 - ABZR87_RS02645 0.23 -0.0
562,878 - ABZR87_RS02645 0.23 +0.0
562,907 + ABZR87_RS02645 0.27 -1.0
562,907 + ABZR87_RS02645 0.27 +0.7
562,908 - ABZR87_RS02645 0.27 -1.6
563,123 + ABZR87_RS02645 0.60 +0.7
563,124 - ABZR87_RS02645 0.60 -0.3
563,124 - ABZR87_RS02645 0.60 -1.3
563,124 - ABZR87_RS02645 0.60 +0.3
563,124 - ABZR87_RS02645 0.60 -1.1
563,405 - +0.1
563,424 + -0.1
563,424 + -0.5
563,425 - -0.2
563,425 - -0.1
563,446 - +0.8
563,574 + ABZR87_RS02650 0.18 -0.3
563,574 + ABZR87_RS02650 0.18 +0.2
563,574 + ABZR87_RS02650 0.18 -1.6
563,574 + ABZR87_RS02650 0.18 -0.1
563,574 + ABZR87_RS02650 0.18 -0.7
563,575 - ABZR87_RS02650 0.18 +0.5
563,583 + ABZR87_RS02650 0.19 -0.3
563,584 - ABZR87_RS02650 0.19 +1.0

Or see this region's nucleotide sequence